Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	K	V	G	L	R	I	D	V	D	T	F	R	G	T	R	E	G	V	P	R	L	L	E	I	L	S	K	H	N	I	Q	A	S	I	F	F	S	V	G	P	D	N	M	G	R	H	L	W	R	L	V	K	P	Q	F	L	W	K
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	L	R	S	N	A	A	S	L	Y	G	W	D	I	L	L	A	G	T	A	W	P	G	K	E	I	G	H	A	N	A	D	I	I	R	E	A	A	K	H	H	E	V	G	L	H	A	W	D	H	H	A	W	Q	A	R	S	G	N	W
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?																												?		?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	R	Q	T	M	I	D	D	I	A	R	G	L	R	T	L	E	E	I	I	G	Q	P	V	T	C	S	A	A	A	G	W	R	A	D	Q	K	V	I	E	A	K	E	A	F	H	L	R	Y	N	S	D	C	R	G	A	M	P	F	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	L	L	E	S	G	N	P	G	T	A	Q	I	P	V	T	L	P	T	W	D	E	V	I	G	R	D	V	K	A	E	D	F	N	G	W	L	L	N	R	I	L	R	D	K	G	T	P	V	Y	T	I	H	A	E	V	E	G	C	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Sequence		Y	Q	H	N	F	V	D	L	L	K	R	A	A	Q	E	G	V	T	F	C	P	L	S	E	L	L	S	E	T	L	P	L	G	Q	V	V	R	G	N	I	A	G	R	E	G	W	L	G	C	Q	Q	I	A	G	S	R
Secondary structure
SS confidence
Disorder																																							?												?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2c1i chain A Region: 2 - 279 Aligned: 194 Modelled: 212 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. Phyre2 PDB 1w17 chain A Region: 2 - 269 Aligned: 189 Modelled: 202 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. Phyre2 PDB 1ny1 chain A Region: 2 - 269 Aligned: 189 Modelled: 198 Confidence: 100.0% Identity: 18% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1z7a chain A domain 1 Region: 4 - 273 Aligned: 222 Modelled: 227 Confidence: 100.0% Identity: 19% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: PA1517-like Phyre2 PDB 2cc0 chain A domain 1 Region: 2 - 271 Aligned: 187 Modelled: 204 Confidence: 100.0% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 3qbu chain D Region: 4 - 272 Aligned: 222 Modelled: 226 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Phyre2 PDB 2iw0 chain A domain 1 Region: 2 - 269 Aligned: 198 Modelled: 207 Confidence: 100.0% Identity: 22% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2j13 chain A domain 1 Region: 2 - 268 Aligned: 170 Modelled: 180 Confidence: 100.0% Identity: 20% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2vyo chain A Region: 2 - 268 Aligned: 190 Modelled: 199 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi Phyre2 PDB 3s6o chain D Region: 4 - 273 Aligned: 222 Modelled: 227 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei Phyre2 PDB 2w3z chain A Region: 2 - 262 Aligned: 191 Modelled: 199 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase Phyre2 PDB 2c1i chain A domain 1 Region: 2 - 275 Aligned: 189 Modelled: 205 Confidence: 100.0% Identity: 22% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2iw0 chain A Region: 2 - 273 Aligned: 202 Modelled: 211 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum Phyre2 PDB 2c71 chain A domain 1 Region: 2 - 282 Aligned: 198 Modelled: 211 Confidence: 100.0% Identity: 18% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 3rxz chain A Region: 4 - 278 Aligned: 227 Modelled: 232 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:polysaccharide deacetylase; PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis Phyre2 PDB 2nly chain A domain 1 Region: 1 - 267 Aligned: 191 Modelled: 198 Confidence: 100.0% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: Divergent polysaccharide deacetylase Phyre2 PDB 1k1x chain A domain 3 Region: 1 - 291 Aligned: 241 Modelled: 248 Confidence: 99.4% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: 4-alpha-glucanotransferase, N-terminal domain Phyre2 PDB 1k1y chain A Region: 1 - 275 Aligned: 231 Modelled: 239 Confidence: 99.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose Phyre2 PDB 2b5d chain X Region: 23 - 281 Aligned: 209 Modelled: 216 Confidence: 99.0% Identity: 15% PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima Phyre2 PDB 2b5d chain X domain 2 Region: 23 - 281 Aligned: 212 Modelled: 216 Confidence: 98.9% Identity: 13% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: AmyC N-terminal domain-like Phyre2 1 c2c1iA_ 2 c1w17A_ 3 d1ny1a_ 4 d1z7aa1 5 d2cc0a1 6 c3qbuD_ 7 d2iw0a1 8 d2j13a1 9 c2vyoA_ 10 c3s6oD_ 11 c2w3zA_ 12 d2c1ia1 13 c2iw0A_ 14 d2c71a1 15 c3rxzA_ 16 d2nlya1 17 d1k1xa3 18 c1k1yA_ 19 c2b5dX_ 20 d2b5dx2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2c1iA_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 2 c1w17A_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 3 d1ny1a_ 100.0 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 4 d1z7aa1 100.0 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:PA1517-like 5 d2cc0a1 100.0 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 6 c3qbuD_ 100.0 20 PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori 7 d2iw0a1 100.0 22 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 8 d2j13a1 100.0 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 9 c2vyoA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 10 c3s6oD_ 100.0 18 PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei 11 c2w3zA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 12 d2c1ia1 100.0 22 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 13 c2iw0A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 14 d2c71a1 100.0 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 15 c3rxzA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:polysaccharide deacetylase; PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis 16 d2nlya1 100.0 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 17 d1k1xa3 99.4 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:4-alpha-glucanotransferase, N-terminal domain 18 c1k1yA_ 99.0 16 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose 19 c2b5dX_ 99.0 15 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima 20 d2b5dx2 98.9 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:AmyC N-terminal domain-like 21 c3hftA_ not modelled 98.8 15 PDB header:hydrolase Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution 22 d1ufaa2 not modelled 98.6 24 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:AmyC N-terminal domain-like 23 c2qv5A_ not modelled 98.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 24 c1ufaA_ not modelled 98.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tt1467 protein; PDBTitle: crystal structure of tt1467 from thermus thermophilus hb8 25 c3n92A_ not modelled 98.2 23 PDB header:transferase Chain: A: PDB Molecule:alpha-amylase, gh57 family; PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose 26 c2wyhA_ not modelled 95.7 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase; PDBTitle: structure of the streptococcus pyogenes family gh38 alpha-2 mannosidase 27 d1v6ta_ not modelled 94.8 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 28 d2i5ia1 not modelled 89.9 12 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:YdjC-like 29 c1htyA_ not modelled 88.2 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii 30 d3bvua3 not modelled 79.8 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 31 c1o7dA_ not modelled 79.4 14 PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 32 c2ow7A_ not modelled 76.3 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 33 c3k2gA_ not modelled 74.4 16 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 34 d1tqha_ not modelled 56.8 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/lipase 35 d1dxqa_ not modelled 55.0 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 36 d2qwxa1 not modelled 50.3 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 37 d1xkla_ not modelled 50.2 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 38 c2qiwA_ not modelled 50.0 13 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 39 c3dqzB_ not modelled 48.3 11 PDB header:lyase Chain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein; PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana 40 d1xjca_ not modelled 47.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 41 d1qrda_ not modelled 42.5 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 42 c3dyvA_ not modelled 41.4 11 PDB header:hydrolase Chain: A: PDB Molecule:esterase d; PDBTitle: snapshots of esterase d from lactobacillus rhamnosus:2 insights into a rotation driven catalytic mechanism 43 d2dfaa1 not modelled 41.1 14 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 44 d3c70a1 not modelled 40.0 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 45 c2x5eA_ not modelled 35.5 18 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 46 d1d4aa_ not modelled 34.4 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 47 c3gzjB_ not modelled 32.3 12 PDB header:hydrolase Chain: B: PDB Molecule:polyneuridine-aldehyde esterase; PDBTitle: crystal structure of polyneuridine aldehyde esterase2 complexed with 16-epi-vellosimine 48 d1e89a_ not modelled 32.2 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 49 c2vdaA_ not modelled 31.9 18 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 50 c1nl3B_ not modelled 28.8 21 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 51 d1x8da1 not modelled 28.0 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 52 c2ipcB_ not modelled 27.9 18 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 53 c3dinB_ not modelled 25.1 18 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 54 d1pnea_ not modelled 24.3 7 Fold:Profilin-like Superfamily:Profilin (actin-binding protein) Family:Profilin (actin-binding protein) 55 c3juxA_ not modelled 24.2 18 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 56 d2pbdp1 not modelled 23.3 7 Fold:Profilin-like Superfamily:Profilin (actin-binding protein) Family:Profilin (actin-binding protein) 57 c1u2eA_ not modelled 22.8 17 PDB header:hydrolase Chain: A: PDB Molecule:2-hydroxy-6-ketonona-2,4-dienedioic acid PDBTitle: crystal structure of the c-c bond hydrolase mhpc 58 c2k6xA_ not modelled 20.7 12 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 59 c3lvtA_ not modelled 20.6 4 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase, family 38; PDBTitle: the crystal structure of a protein in the glycosyl hydrolase2 family 38 from enterococcus faecalis to 2.55a 60 c3fobA_ not modelled 20.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:bromoperoxidase; PDBTitle: crystal structure of bromoperoxidase from bacillus anthracis 61 d1jmsa4 not modelled 20.3 11 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:DNA polymerase beta-like 62 d1xw8a_ not modelled 19.6 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 63 d1a8sa_ not modelled 18.4 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 64 d1prtf_ not modelled 18.2 21 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 65 d1r57a_ not modelled 17.9 11 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 66 c2qlxA_ not modelled 17.8 26 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 67 c2qlwA_ not modelled 17.8 26 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 68 c3m1yA_ not modelled 17.3 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase (serb); PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori 69 d1brta_ not modelled 17.1 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 70 d1vp8a_ not modelled 16.8 9 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 71 d1a8qa_ not modelled 16.7 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 72 d1uk8a_ not modelled 16.3 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase 73 d1va4a_ not modelled 16.0 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 74 d1c4xa_ not modelled 15.6 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase 75 c3u1tA_ not modelled 15.4 14 PDB header:hydrolase Chain: A: PDB Molecule:dmma haloalkane dehalogenase; PDBTitle: haloalkane dehalogenase, dmma, of marine microbial origin 76 d1r3da_ not modelled 15.3 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein VC1974 77 d1l7da2 not modelled 14.3 7 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:L-alanine dehydrogenase-like 78 d1s2oa1 not modelled 14.0 15 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 79 d1b6ga_ not modelled 13.8 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase 80 d1t57a_ not modelled 13.8 15 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 81 c3dnfB_ not modelled 13.5 21 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 82 c3rhgA_ not modelled 13.1 14 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 83 c2cjpA_ not modelled 13.0 16 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: structure of potato (solanum tuberosum) epoxide hydrolase i2 (steh1) 84 d2c7fa2 not modelled 12.9 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 85 d1hkha_ not modelled 12.7 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 86 c2wtaA_ not modelled 12.2 20 PDB header:hydrolase Chain: A: PDB Molecule:nicotinamidase; PDBTitle: acinetobacter baumanii nicotinamidase pyrazinamidease 87 c2e3jA_ not modelled 11.7 15 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase ephb; PDBTitle: the crystal structure of epoxide hydrolase b (rv1938) from2 mycobacterium tuberculosis at 2.1 angstrom 88 c3obeB_ not modelled 11.7 9 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 89 c1vjqB_ not modelled 11.6 23 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 90 d1yqea1 not modelled 11.6 14 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 91 d2rhwa1 not modelled 11.6 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase 92 d1ufoa_ not modelled 11.5 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein TT1662 93 d1pava_ not modelled 10.8 14 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 94 d1p6va_ not modelled 10.7 23 Fold:Small protein B (SmpB) Superfamily:Small protein B (SmpB) Family:Small protein B (SmpB) 95 c3kc2A_ not modelled 10.7 27 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 96 c2xt0A_ not modelled 10.6 16 PDB header:hydrolase Chain: A: PDB Molecule:haloalkane dehalogenase; PDBTitle: dehalogenase dppa from plesiocystis pacifica sir-i 97 c2xfyA_ not modelled 10.3 20 PDB header:hydrolase Chain: A: PDB Molecule:beta-amylase; PDBTitle: crystal structure of barley beta-amylase complexed with2 alpha-cyclodextrin 98 c1cr6A_ not modelled 10.2 16 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor 99 d1zd3a2 not modelled 10.1 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0