PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dyvA_

Fold library id	PDB Header	Molecule	Title
c3dyvA_	PDB header: hydrolase	Chain: A: PDB Molecule: esterase d;	PDBTitle: snapshots of esterase d from lactobacillus rhamnosus:2 insights into a rotation driven catalytic mechanism

Links to external resources
Added to library: Sat Aug 28 20:23:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F R K P Q P F E Y E G T D T G V V L L H A Y T G S P N D M N F M A R A L Q R S G Y G V Y V P L F S G H G T V E P L D I L T K G N P D I W W A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
G G G G T T
T T
S S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E S S A A V A H M T A K Y A K V F V F G L S L G G I F A M K A L E T L P G I T A G G V F S S P I L P G K H H L V P G F L K Y A E Y M N R L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T
S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G K S D E S T Q I L A Y L P G Q L A A I D Q F A T T V A A D L N L V K Q P T F I G Q A G Q D E L V D G R L A Y Q L R D A L I N A A R V D F H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T G G G
S
T T
S S S
T T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence W Y D D A K H V I T V N S A H H A L E E D V I A F M Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	R	K	P	Q	P	F	E	Y	E	G	T	D	T	G	V	V	L	L	H	A	Y	T	G	S	P	N	D	M	N	F	M	A	R	A	L	Q	R	S	G	Y	G	V	Y	V	P	L	F	S	G	H	G	T	V	E	P	L	D	I	L	T	K	G	N	P	D	I	W	W	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S									T	T			G	G	G	G										T	T									T	T		S	S	S		T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	S	S	A	A	V	A	H	M	T	A	K	Y	A	K	V	F	V	F	G	L	S	L	G	G	I	F	A	M	K	A	L	E	T	L	P	G	I	T	A	G	G	V	F	S	S	P	I	L	P	G	K	H	H	L	V	P	G	F	L	K	Y	A	E	Y	M	N	R	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T		S								T														S	S								S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	K	S	D	E	S	T	Q	I	L	A	Y	L	P	G	Q	L	A	A	I	D	Q	F	A	T	T	V	A	A	D	L	N	L	V	K	Q	P	T	F	I	G	Q	A	G	Q	D	E	L	V	D	G	R	L	A	Y	Q	L	R	D	A	L	I	N	A	A	R	V	D	F	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																													T	G	G	G			S								T	T		S	S	S		T	T										T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	W	Y	D	D	A	K	H	V	I	T	V	N	S	A	H	H	A	L	E	E	D	V	I	A	F	M	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T			S		T	T	T	S	T	T