Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP13656
DateThu Jan 5 11:33:39 GMT 2012
Unique Job IDada954da858f1b14

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2dskA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus
Confidence and coverage
Confidence:100.0% Coverage: 33%
294 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
426 residues ( 47%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKLNIFTKSMIGMGLVCSALPALAMEAWNNQQGGNKYQVIFDGKIYENAWWVSSTNCPGK
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   .........70.........80.........90.........100.........110.........120
Sequence  AKANDATNPWRLKRTATAAEISQFGNTLSCEKSGSSSSSNSNTPASNTPANGGSATPAQG
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   .........130.........140.........150.........160.........170.........180
Sequence  TVPSNSSVVAWNKQQGGQTWYVVFNGAVYKNAWWVASSNCPGDAKSNDASNPWRYVRAAT
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   .........190.........200.........210.........220.........230.........240
Sequence  ATEISETSNPQSCTSAPQPSPDVKPAPDVKPAPDVQPAPADKSNDNYAVVAWKGQEGSST
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Disorder  ??
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   .........250.........260.........270.........280.........290.........300
Sequence  WYVIYNGGIYKNAWWVGAANCPGDAKENDASNPWRYVRAATATEISQYGNPGSCSVKPDN
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   .........310.........320.........330.........340.........350.........360
Sequence  NGGAVTPVDPTPETPVTPTPDNSEPSTPADSVNDYSLQAWSGQEGSEIYHVIFNGNVYKN
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   .........370.........380.........390.........400.........410.........420
Sequence  AWWVGSKDCPRGTSAENSNNPWRLERTATAAELSQYGNPTTCEIDNGGVIVADGFQASKA
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   .........430.........440.........450.........460.........470.........480
Sequence  YSADSIVDYNDAHYKTSVDQDAWGFVPGGDNPWKKYEPAKAWSASTVYVKGDRVVVDGQA
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   .........490.........500.........510.........520.........530.........540
Sequence  YEALFWTQSDNPALVANQNATGSNSRPWKPLGKAQSYSNEELNNAPQFNPETLYASDTLI
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   .........550.........560.........570.........580.........590.........600
Sequence  RFNGVNYISQSKVQKVSPSDSNPWRVFVDWTGTKERVGTPKKAWPKHVYAPYVDFTLNTI
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   .........610.........620.........630.........640.........650.........660
Sequence  PDLAALAKNHNVNHFTLAFVVSKDANTCLPTWGTAYGMQNYAQYSKIKALREAGGDVMLS
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   .........670.........680.........690.........700.........710.........720
Sequence  IGGANNAPLAASCKNVDDLMQHYYDIVDNLNLKVLDFDIEGTWVADQASIERRNLAVKKV
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   .........730.........740.........750.........760.........770.........780
Sequence  QDKWKSEGKDIAIWYTLPILPTGLTPEGMNVLSDAKAKGVELAGVNVMTMDYGNAICQSA
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   .........790.........800.........810.........820.........830.........840
Sequence  NTEGQNIHGKCATSAIANLHSQLKGLHPNKSDAEIDAMMGTTPMVGVNDVQGEVFYLSDA
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   .........850.........860.........870.........880.........890.......
Sequence  RLVMQDAQKRNLGMVGIWSIARDLPGGTNLSPEFHGLTKEQAPKYAFSEIFAPFTKQ
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2dsk chain A

3D model

Region: 578 - 897
Aligned: 294
Modelled: 320
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus

Phyre2

PDB 3ian chain A

3D model

Region: 586 - 897
Aligned: 295
Modelled: 312
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from lactococcus lactis2 subsp. lactis

Phyre2

PDB 3ebv chain A

3D model

Region: 586 - 894
Aligned: 280
Modelled: 292
Confidence: 99.9%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:chinitase a;
PDBTitle: crystal structure of putative chitinase a from streptomyces2 coelicolor.

Phyre2

PDB 2hvm chain A

3D model

Region: 600 - 867
Aligned: 235
Modelled: 268
Confidence: 99.9%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 3d5h chain A

3D model

Region: 600 - 863
Aligned: 230
Modelled: 264
Confidence: 99.9%
Identity: 14%
PDB header:protein binding
Chain: A: PDB Molecule:haementhin;
PDBTitle: crystal structure of haementhin from haemanthus multiflorus2 at 2.0a resolution: formation of a novel loop on a tim3 barrel fold and its functional significance

Phyre2

PDB 2uy2 chain A

3D model

Region: 598 - 863
Aligned: 234
Modelled: 249
Confidence: 99.8%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:endochitinase;
PDBTitle: sccts1_apo crystal structure

Phyre2

PDB 3n12 chain A

3D model

Region: 584 - 894
Aligned: 283
Modelled: 294
Confidence: 99.8%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal stricture of chitinase in complex with zinc atoms from2 bacillus cereus nctu2

Phyre2

PDB 2gsj chain A

3D model

Region: 602 - 863
Aligned: 228
Modelled: 251
Confidence: 99.8%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:protein ppl-2;
PDBTitle: cdna cloning and 1.75a crystal structure determination of2 ppl2, a novel chimerolectin from parkia platycephala seeds3 exhibiting endochitinolytic activity

Phyre2

PDB 1cnv chain A

3D model

Region: 593 - 863
Aligned: 244
Modelled: 260
Confidence: 99.8%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 3b9e chain A

3D model

Region: 504 - 865
Aligned: 355
Modelled: 362
Confidence: 99.7%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi

Phyre2

PDB 2xuc chain A

3D model

Region: 602 - 863
Aligned: 238
Modelled: 251
Confidence: 99.7%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: natural product-guided discovery of a fungal chitinase2 inhibitor

Phyre2

PDB 1itx chain A domain 1

3D model

Region: 578 - 866
Aligned: 271
Modelled: 289
Confidence: 99.7%
Identity: 15%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 1ur8 chain B

3D model

Region: 608 - 863
Aligned: 237
Modelled: 256
Confidence: 99.7%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:chitinase b;
PDBTitle: interactions of a family 18 chitinase with the designed2 inhibitor hm508, and its degradation product,3 chitobiono-delta-lactone

Phyre2

PDB 1rd6 chain A

3D model

Region: 504 - 865
Aligned: 355
Modelled: 355
Confidence: 99.7%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of s. marcescens chitinase a mutant w167a

Phyre2

PDB 1edq chain A domain 2

3D model

Region: 569 - 863
Aligned: 266
Modelled: 284
Confidence: 99.6%
Identity: 14%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 3co4 chain A

3D model

Region: 585 - 867
Aligned: 259
Modelled: 283
Confidence: 99.6%
Identity: 11%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from bacteroides2 thetaiotaomicron

Phyre2

PDB 1jnd chain A domain 1

3D model

Region: 613 - 872
Aligned: 229
Modelled: 243
Confidence: 99.6%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 1w9p chain A domain 1

3D model

Region: 583 - 867
Aligned: 257
Modelled: 285
Confidence: 99.6%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 1ta3 chain A

3D model

Region: 602 - 863
Aligned: 227
Modelled: 244
Confidence: 99.6%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Type II chitinase

Phyre2

PDB 3poh chain A

3D model

Region: 578 - 789
Aligned: 197
Modelled: 212
Confidence: 99.5%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1;
PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution

Phyre2

PDB 2d49 chain A

3D model

Region: 459 - 518
Aligned: 50
Modelled: 50
Confidence: 99.2%
Identity: 40%
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c

Phyre2

PDB 1wgo chain A

3D model

Region: 287 - 369
Aligned: 83
Modelled: 83
Confidence: 72.2%
Identity: 12%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PKD domain
Family: PKD domain

Phyre2

PDB 2c26 chain A

3D model

Region: 298 - 369
Aligned: 72
Modelled: 72
Confidence: 68.1%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: structural basis for the promiscuous specificity of the2 carbohydrate-binding modules from the beta-sandwich super3 family

Phyre2
1

c2dskA_
2

c3ianA_
3

c3ebvA_
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d2hvma_
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c3d5hA_
6

c2uy2A_
7

c3n12A_
8

c2gsjA_
9

d1cnva_
10

c3b9eA_
11

c2xucA_
12

d1itxa1
13

c1ur8B_
14

c1rd6A_
15

d1edqa2
16

c3co4A_
17

d1jnda1
18

d1w9pa1
19

d1ta3a_
20

c3pohA_
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c2d49A_
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d1wgoa_
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c2c26A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2dskA_



100.0 34 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus
2c3ianA_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from lactococcus lactis2 subsp. lactis
3c3ebvA_



99.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:chinitase a;
PDBTitle: crystal structure of putative chitinase a from streptomyces2 coelicolor.
4d2hvma_



99.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
5c3d5hA_



99.9 14 PDB header:protein binding
Chain: A: PDB Molecule:haementhin;
PDBTitle: crystal structure of haementhin from haemanthus multiflorus2 at 2.0a resolution: formation of a novel loop on a tim3 barrel fold and its functional significance
6c2uy2A_



99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:endochitinase;
PDBTitle: sccts1_apo crystal structure
7c3n12A_



99.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal stricture of chitinase in complex with zinc atoms from2 bacillus cereus nctu2
8c2gsjA_



99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:protein ppl-2;
PDBTitle: cdna cloning and 1.75a crystal structure determination of2 ppl2, a novel chimerolectin from parkia platycephala seeds3 exhibiting endochitinolytic activity
9d1cnva_



99.8 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
10c3b9eA_



99.7 20 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
11c2xucA_



99.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: natural product-guided discovery of a fungal chitinase2 inhibitor
12d1itxa1



99.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
13c1ur8B_



99.7 20 PDB header:hydrolase
Chain: B: PDB Molecule:chitinase b;
PDBTitle: interactions of a family 18 chitinase with the designed2 inhibitor hm508, and its degradation product,3 chitobiono-delta-lactone
14c1rd6A_



99.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of s. marcescens chitinase a mutant w167a
15d1edqa2



99.6 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
16c3co4A_



99.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from bacteroides2 thetaiotaomicron
17d1jnda1



99.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
18d1w9pa1



99.6 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
19d1ta3a_



99.6 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
20c3pohA_



99.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1;
PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution
21c1wnoB_



not modelled 99.5 18 PDB header:hydrolase
Chain: B: PDB Molecule:chitinase;
PDBTitle: crystal structure of a native chitinase from aspergillus fumigatus yj-2 407
22c1itxA_



not modelled 99.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: catalytic domain of chitinase a1 from bacillus circulans wl-12
23d1goia2



not modelled 99.5 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
24d1wb0a1



not modelled 99.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
25d2pi6a1



not modelled 99.5 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
26c3simA_



not modelled 99.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:protein, family 18 chitinase;
PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus
27d1hjxa1



not modelled 99.5 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
28c1ll4A_



not modelled 99.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase 1;
PDBTitle: structure of c. immitis chitinase 1 complexed with2 allosamidin
29d1ll7a1



not modelled 99.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
30c1lq0A_



not modelled 99.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:chitotriosidase;
PDBTitle: crystal structure of human chitotriosidase at 2.2 angstrom2 resolution
31c1kfwA_



not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase b;
PDBTitle: structure of catalytic domain of psychrophilic chitinase b from2 arthrobacter tad20
32c3chfA_



not modelled 99.4 15 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of aspergillus fumigatus chitinase b1 in complex2 with tetrapeptide
33c1hjvA_



not modelled 99.4 15 PDB header:lectin
Chain: A: PDB Molecule:chitinase-3 like protein 1;
PDBTitle: crystal structure of hcgp-39 in complex with chitin2 tetramer
34d1kfwa1



not modelled 99.4 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
35c1wb0A_



not modelled 99.4 15 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:chitotriosidase 1;
PDBTitle: specificity and affinity of natural product cyclopentapeptide2 inhibitor argifin against human chitinase
36c3qokA_



not modelled 99.4 18 PDB header:hydrolase
Chain: A: PDB Molecule:putative chitinase ii;
PDBTitle: crystal structure of putative chitinase ii from klebsiella pneumoniae
37c3alfA_



not modelled 99.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, class v;
PDBTitle: crystal structure of class v chitinase from nicotiana tobaccum
38c1jneA_



not modelled 99.4 17 PDB header:hormone/growth factor
Chain: A: PDB Molecule:imaginal disc growth factor-2;
PDBTitle: crystal structure of imaginal disc growth factor-2
39c3fxyA_



not modelled 99.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:acidic mammalian chitinase;
PDBTitle: acidic mammalian chinase, catalytic domain
40d1vf8a1



not modelled 99.4 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
41c3g6lA_



not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: the crystal structure of a chitinase crchi1 from the nematophagous2 fungus clonostachys rosea
42c4a5qC_



not modelled 99.3 21 PDB header:hydrolase
Chain: C: PDB Molecule:chi1;
PDBTitle: crystal structure of the chitinase chi1 fitted into the 3d structure2 of the yersinia entomophaga toxin complex
43c3oa5A_



not modelled 99.3 21 PDB header:hydrolase
Chain: A: PDB Molecule:chi1;
PDBTitle: the structure of chi1, a chitinase from yersinia entomophaga
44d1nara_



not modelled 99.3 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
45c3aquD_



not modelled 99.3 15 PDB header:hydrolase
Chain: D: PDB Molecule:at4g19810;
PDBTitle: crystal structure of a class v chitinase from arabidopsis thaliana
46c3bxwB_



not modelled 99.3 12 PDB header:hydrolase
Chain: B: PDB Molecule:chitinase domain-containing protein 1;
PDBTitle: crystal structure of stabilin-1 interacting chitinase-like2 protein, si-clp
47c2d49A_



99.2 40 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c
48d1edta_



not modelled 99.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
49c1e9lA_



not modelled 99.2 18 PDB header:macrophage secretory protein
Chain: A: PDB Molecule:ym1 secretory protein;
PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site
50d2ebna_



not modelled 99.1 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
51c3cz8A_



not modelled 99.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:putative sporulation-specific glycosylase ydhd;
PDBTitle: crystal structure of putative sporulation-specific glycosylase ydhd2 from bacillus subtilis
52d1aiwa_



not modelled 99.0 28 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
53d1goia1



not modelled 99.0 22 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
54d1eoka_



not modelled 98.4 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
55c3b0vD_



not modelled 94.6 13 PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
56d1ur4a_



not modelled 94.6 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57d2fiqa1



not modelled 90.4 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
58d1ed7a_



not modelled 90.1 35 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
59c3mi6A_



not modelled 82.6 21 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
60d1nq6a_



not modelled 81.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
61c2wwcA_



not modelled 80.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase;
PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand
62c2aamA_



not modelled 78.4 18 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein tm1410;
PDBTitle: crystal structure of a putative glycosidase (tm1410) from thermotoga2 maritima at 2.20 a resolution
63d2aama1



not modelled 78.4 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:TM1410-like
64d1i1wa_



not modelled 77.3 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
65c2yfnA_



not modelled 76.5 25 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
66c3canA_



not modelled 76.0 13 PDB header:lyase activator
Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme;
PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482
67c2i5gB_



not modelled 74.8 15 PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase;
PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa
68c3lu2B_



not modelled 72.7 14 PDB header:hydrolase
Chain: B: PDB Molecule:lmo2462 protein;
PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase
69d1wgoa_



72.2 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
70c2c26A_



68.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: structural basis for the promiscuous specificity of the2 carbohydrate-binding modules from the beta-sandwich super3 family
71c1uhvD_



not modelled 66.3 11 PDB header:hydrolase
Chain: D: PDB Molecule:beta-xylosidase;
PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase
72d1v6wa2



not modelled 65.6 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
73d1tuxa_



not modelled 61.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
74d1fh9a_



not modelled 57.1 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
75d1auza_



not modelled 55.9 10 Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Anti-sigma factor antagonist SpoIIaa
76d1xrsb2



not modelled 55.8 22 Fold:Dodecin subunit-like
Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
77c2xm5A_



not modelled 55.3 21 PDB header:transferase
Chain: A: PDB Molecule:cloq;
PDBTitle: structural and mechanistic analysis of the magnesium-2 independent aromatic prenyltransferase cloq from the3 clorobiocin biosynthetic pathway
78d1qwga_



not modelled 52.1 17 Fold:TIM beta/alpha-barrel
Superfamily:(2r)-phospho-3-sulfolactate synthase ComA
Family:(2r)-phospho-3-sulfolactate synthase ComA
79d1bg4a_



not modelled 52.1 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
80d1sfla_



not modelled 51.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
81c3fdgA_



not modelled 49.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19;
PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
82c3jugA_



not modelled 45.3 12 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
83c1l0qC_



not modelled 45.2 15 PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
84d1w91a2



not modelled 43.5 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
85c2wagA_



not modelled 42.8 11 PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme, putative;
PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis.
86d1zdya1



not modelled 42.4 21 Fold:Antiparallel beta/alpha barrel (PT-barrel)
Superfamily:Prenyltransferase-like
Family:Prenyltransferase-like
87d1vc1a_



not modelled 41.8 13 Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Anti-sigma factor antagonist SpoIIaa
88d1tv8a_



not modelled 41.1 12 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:MoCo biosynthesis proteins
89d1geha1



not modelled 41.0 20 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
90c2kzwA_



not modelled 40.4 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q8psa4 from methanosarcina mazei, northeast2 structural genomics consortium target mar143a
91c2qw5B_



not modelled 40.3 12 PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution
92d1itua_



not modelled 39.1 12 Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Renal dipeptidase
93d1ho8a_



not modelled 36.7 12 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Regulatory subunit H of the V-type ATPase
94c2o14A_



not modelled 35.1 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yxim;
PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595
95c3emzA_



not modelled 34.8 13 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative
96d1l0qa1



not modelled 34.4 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:PKD domain
Family:PKD domain
97c3itcA_



not modelled 33.9 13 PDB header:hydrolase
Chain: A: PDB Molecule:renal dipeptidase;
PDBTitle: crystal structure of sco3058 with bound citrate and glycerol
98d1th8b_



not modelled 33.6 9 Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Anti-sigma factor antagonist SpoIIaa
99d1ykwa1



not modelled 33.4 22 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
100d1svda1



not modelled 32.6 16 Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
101c2xn1B_



not modelled 31.2 21 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
102d1v0la_



not modelled 30.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
103c3jquA_



not modelled 30.8 12 PDB header:cell adhesion
Chain: A: PDB Molecule:collagenase;
PDBTitle: crystal structure of clostridium histolyticum colg collagenase2 polycystic kidney disease domain at 1.4 angstrom resolution
104c2qygC_



not modelled 30.7 18 PDB header:unknown function
Chain: C: PDB Molecule:ribulose bisphosphate carboxylase-like protein 2;
PDBTitle: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas2 palustris
105d1rpxa_



not modelled 30.3 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
106c3ndyA_



not modelled 29.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
107c2ylaA_



not modelled 29.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis
108c2j75A_



not modelled 29.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
109c2yr1B_



not modelled 29.5 16 PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426
110c2zunB_



not modelled 29.1 15 PDB header:hydrolase
Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase;
PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii
111c3nsnA_



not modelled 28.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylglucosaminidase;
PDBTitle: crystal structure of insect beta-n-acetyl-d-hexosaminidase ofhex12 complexed with tmg-chitotriomycin
112d1q5ma_



not modelled 28.1 10 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
113c3e77A_



not modelled 27.6 18 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp
114d1jaka1



not modelled 27.5 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
115d1n82a_



not modelled 27.3 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
116c2cksB_



not modelled 27.3 16 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
117c3qm2A_



not modelled 27.1 23 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
118d1gqna_



not modelled 26.6 11 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
119c2ou4C_



not modelled 26.3 8 PDB header:isomerase
Chain: C: PDB Molecule:d-tagatose 3-epimerase;
PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii
120c3sviA_



not modelled 25.5 22 PDB header:signaling protein
Chain: A: PDB Molecule:type iii effector hopab2;
PDBTitle: structure of the pto-binding domain of hoppmal generated by limited2 thermolysin digestion

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0