Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	K	L	M	Y	I	F	A	I	F	I	V	A	A	I	T	C	I	S	Q	P	K	K	T	T	L	R	D	K	A	M	V	N	Y	A	F	D	Y	L	S	S	P	G	S	L	P	F	T	T	A	A	T	E	L	S	A	I	H
Secondary structure
SS confidence
Disorder		?	?	?	?																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	H	S	T	S	Q	Y	R	L	G	E	F	Y	L	H	G	S	D	G	K	P	L	D	Y	T	Q	A	R	Y	W	Y	E	Q	S	A	E	Q	E	N	P	R	A	Q	S	K	L	G	W	I	Y	L	K	G	L	G	V	K	P	D	T
Secondary structure
SS confidence
Disorder																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	K	A	I	L	W	Y	K	E	A	A	E	Q	G	Y	A	H	A	Q	Y	T	L	G	L	I	Y	R	N	G	S	G	I	N	V	N	H	Y	E	S	Q	K	W	L	K	L	T	A	K	Q	H	Y	K	N	A	E	R	L	L	A	G
Secondary structure
SS confidence
Disorder																?																																		?	?	?
Disorder confidence
		.	.	.	.
Sequence		L	P	A	H
Secondary structure
SS confidence
Disorder			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3e4b chain D Region: 14 - 184 Aligned: 168 Modelled: 171 Confidence: 99.9% Identity: 21% PDB header:protein binding Chain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r Phyre2 PDB 1ouv chain A Region: 29 - 182 Aligned: 153 Modelled: 154 Confidence: 99.9% Identity: 27% Fold: alpha-alpha superhelix Superfamily: HCP-like Family: HCP-like Phyre2 PDB 3rjv chain A Region: 19 - 181 Aligned: 162 Modelled: 163 Confidence: 99.8% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:putative sel1 repeat protein; PDBTitle: crystal structure of a putative sel1 repeat protein (kpn_04481) from2 klebsiella pneumoniae subsp. pneumoniae at 1.65 a resolution Phyre2 PDB 2xm6 chain A Region: 18 - 182 Aligned: 164 Modelled: 165 Confidence: 99.8% Identity: 29% PDB header:unknown function Chain: A: PDB Molecule:protein corresponding to locus c5321 from cft073 e.coli PDBTitle: crystal structure of the protein corresponding to locus c5321 from2 cft073 e.coli strain Phyre2 PDB 1klx chain A Region: 43 - 178 Aligned: 129 Modelled: 136 Confidence: 99.8% Identity: 18% Fold: alpha-alpha superhelix Superfamily: HCP-like Family: HCP-like Phyre2 PDB 3pe3 chain D Region: 28 - 182 Aligned: 145 Modelled: 155 Confidence: 98.2% Identity: 12% PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate Phyre2 PDB 2pl2 chain A Region: 31 - 182 Aligned: 147 Modelled: 152 Confidence: 97.9% Identity: 17% PDB header:protein binding Chain: A: PDB Molecule:hypothetical conserved protein ttc0263; PDBTitle: crystal structure of ttc0263: a thermophilic tpr protein in thermus2 thermophilus hb27 Phyre2 PDB 2q7f chain A Region: 26 - 179 Aligned: 149 Modelled: 154 Confidence: 97.6% Identity: 17% PDB header:protein binding Chain: A: PDB Molecule:yrrb protein; PDBTitle: crystal structure of yrrb: a tpr protein with an unusual peptide-2 binding site Phyre2 PDB 2vyi chain A Region: 23 - 182 Aligned: 116 Modelled: 121 Confidence: 97.6% Identity: 13% PDB header:chaperone Chain: A: PDB Molecule:sgta protein; PDBTitle: crystal structure of the tpr domain of human sgt Phyre2 PDB 2vq2 chain A Region: 30 - 182 Aligned: 148 Modelled: 153 Confidence: 97.4% Identity: 9% PDB header:structural protein Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor Phyre2 PDB 2xpi chain A Region: 26 - 183 Aligned: 153 Modelled: 158 Confidence: 97.3% Identity: 11% PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 Phyre2 PDB 2hyz chain A Region: 30 - 168 Aligned: 131 Modelled: 136 Confidence: 97.3% Identity: 15% PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form) Phyre2 PDB 2ho1 chain B Region: 30 - 182 Aligned: 147 Modelled: 149 Confidence: 97.3% Identity: 10% PDB header:protein binding Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf; PDBTitle: functional characterization of pseudomonas aeruginosa pilf Phyre2 PDB 2r5s chain B Region: 31 - 183 Aligned: 143 Modelled: 153 Confidence: 97.1% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 Phyre2 PDB 1elw chain A Region: 29 - 183 Aligned: 113 Modelled: 114 Confidence: 97.1% Identity: 10% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 3as5 chain A Region: 29 - 182 Aligned: 144 Modelled: 149 Confidence: 97.0% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:mama; PDBTitle: mama amb-1 p212121 Phyre2 PDB 1wao chain 4 Region: 30 - 182 Aligned: 109 Modelled: 119 Confidence: 96.9% Identity: 15% PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure Phyre2 PDB 3gyz chain B Region: 29 - 182 Aligned: 110 Modelled: 115 Confidence: 96.8% Identity: 14% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein ipgc; PDBTitle: crystal structure of ipgc from shigella flexneri Phyre2 PDB 1iyg chain A Region: 27 - 182 Aligned: 117 Modelled: 122 Confidence: 96.8% Identity: 11% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 3urz chain B Region: 29 - 184 Aligned: 151 Modelled: 156 Confidence: 96.7% Identity: 7% PDB header:protein binding Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein (bacova_03105) from2 bacteroides ovatus atcc 8483 at 2.19 a resolution Phyre2 1 c3e4bD_ 2 d1ouva_ 3 c3rjvA_ 4 c2xm6A_ 5 d1klxa_ 6 c3pe3D_ 7 c2pl2A_ 8 c2q7fA_ 9 c2vyiA_ 10 c2vq2A_ 11 c2xpiA_ 12 c2hyzA_ 13 c2ho1B_ 14 c2r5sB_ 15 d1elwa_ 16 c3as5A_ 17 c1wao4_ 18 c3gyzB_ 19 d1iyga_ 20 c3urzB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3e4bD_ 99.9 21 PDB header:protein binding Chain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r 2 d1ouva_ 99.9 27 Fold:alpha-alpha superhelix Superfamily:HCP-like Family:HCP-like 3 c3rjvA_ 99.8 14 PDB header:protein binding Chain: A: PDB Molecule:putative sel1 repeat protein; PDBTitle: crystal structure of a putative sel1 repeat protein (kpn_04481) from2 klebsiella pneumoniae subsp. pneumoniae at 1.65 a resolution 4 c2xm6A_ 99.8 29 PDB header:unknown function Chain: A: PDB Molecule:protein corresponding to locus c5321 from cft073 e.coli PDBTitle: crystal structure of the protein corresponding to locus c5321 from2 cft073 e.coli strain 5 d1klxa_ 99.8 18 Fold:alpha-alpha superhelix Superfamily:HCP-like Family:HCP-like 6 c3pe3D_ 98.2 12 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 7 c2pl2A_ 97.9 17 PDB header:protein binding Chain: A: PDB Molecule:hypothetical conserved protein ttc0263; PDBTitle: crystal structure of ttc0263: a thermophilic tpr protein in thermus2 thermophilus hb27 8 c2q7fA_ 97.6 17 PDB header:protein binding Chain: A: PDB Molecule:yrrb protein; PDBTitle: crystal structure of yrrb: a tpr protein with an unusual peptide-2 binding site 9 c2vyiA_ 97.6 13 PDB header:chaperone Chain: A: PDB Molecule:sgta protein; PDBTitle: crystal structure of the tpr domain of human sgt 10 c2vq2A_ 97.4 9 PDB header:structural protein Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor 11 c2xpiA_ 97.3 11 PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 12 c2hyzA_ 97.3 15 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form) 13 c2ho1B_ 97.3 10 PDB header:protein binding Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf; PDBTitle: functional characterization of pseudomonas aeruginosa pilf 14 c2r5sB_ 97.1 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 15 d1elwa_ 97.1 10 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 16 c3as5A_ 97.0 14 PDB header:protein binding Chain: A: PDB Molecule:mama; PDBTitle: mama amb-1 p212121 17 c1wao4_ 96.9 15 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 18 c3gyzB_ 96.8 14 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein ipgc; PDBTitle: crystal structure of ipgc from shigella flexneri 19 d1iyga_ 96.8 11 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 20 c3urzB_ 96.7 7 PDB header:protein binding Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein (bacova_03105) from2 bacteroides ovatus atcc 8483 at 2.19 a resolution 21 d1tjca_ not modelled 96.6 13 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 22 d1p5qa1 not modelled 96.5 9 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 23 c3mv3B_ not modelled 96.5 11 PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop 24 c2gw1A_ not modelled 96.4 17 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial precursor proteins import receptor; PDBTitle: crystal structure of the yeast tom70 25 d2buga1 not modelled 96.4 13 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 26 c2y4tA_ not modelled 96.3 22 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk) 27 c3mkrA_ not modelled 96.3 11 PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 28 c3gw4B_ not modelled 96.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from deinococcus2 radiodurans. northeast structural genomics consortium target drr162b. 29 c2ifuA_ not modelled 96.2 9 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:gamma-snap; PDBTitle: crystal structure of a gamma-snap from danio rerio 30 c2dbaA_ not modelled 96.1 15 PDB header:structural protein Chain: A: PDB Molecule:smooth muscle cell associated protein-1, isoform PDBTitle: the solution structure of the tetratrico peptide repeat of2 human smooth muscle cell associated protein-1, isoform 2 31 c3rkvA_ not modelled 96.0 8 PDB header:isomerase Chain: A: PDB Molecule:putative peptidylprolyl isomerase; PDBTitle: c-terminal domain of protein c56c10.10, a putative peptidylprolyl2 isomerase, from caenorhabditis elegans 32 c2e2eA_ not modelled 95.8 9 PDB header:lyase Chain: A: PDB Molecule:formate-dependent nitrite reductase complex nrfg subunit; PDBTitle: tpr domain of nrfg mediates the complex formation between heme lyase2 and formate-dependent nitrite reductase in escherichia coli o157:h7 33 d1w3ba_ not modelled 95.8 12 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 34 c3q75A_ not modelled 95.7 12 PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide 35 c2xcbA_ not modelled 95.6 10 PDB header:protein binding Chain: A: PDB Molecule:regulatory protein pcrh; PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd 36 d1a17a_ not modelled 95.2 12 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 37 c2kckA_ not modelled 95.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tpr repeat; PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a 38 d1fcha_ not modelled 95.1 19 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 39 c2vsnB_ not modelled 95.1 11 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 40 c2c2lD_ not modelled 95.1 11 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 41 c3iegB_ not modelled 95.1 21 PDB header:chaperone Chain: B: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of p58(ipk) tpr domain at 2.5 a 42 c3fp4A_ not modelled 95.1 11 PDB header:transport protein Chain: A: PDB Molecule:tpr repeat-containing protein yhr117w; PDBTitle: crystal structure of tom71 complexed with ssa1 c-terminal2 fragment 43 d2c2la1 not modelled 94.9 14 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 44 c3cvpA_ not modelled 94.4 20 PDB header:transport protein Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5; PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl) 45 d1qqea_ not modelled 94.4 11 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 46 c2kcvA_ not modelled 94.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tetratricopeptide repeat domain protein; PDBTitle: solution nmr structure of tetratricopeptide repeat domain2 protein sru_0103 from salinibacter ruber, northeast3 structural genomics consortium (nesg) target srr115c 47 d2hr2a1 not modelled 94.2 19 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:CT2138-like 48 c2katA_ not modelled 94.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206 49 d1hxia_ not modelled 93.9 7 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 50 d1kt1a1 not modelled 93.7 10 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 51 c3qkyA_ not modelled 93.7 14 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd 52 d1xnfa_ not modelled 93.6 9 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 53 d1zu2a1 not modelled 93.4 15 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 54 c1fchB_ not modelled 93.4 8 PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5 55 d1ihga1 not modelled 93.3 12 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 56 c2yhcA_ not modelled 93.1 12 PDB header:membrane protein Chain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli 57 d1qsaa1 not modelled 93.1 9 Fold:alpha-alpha superhelix Superfamily:Bacterial muramidases Family:Bacterial muramidases 58 d2fbna1 not modelled 92.8 9 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 59 c2fbnA_ not modelled 92.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase, putative; PDBTitle: plasmodium falciparum putative fk506-binding protein2 pfl2275c, c-terminal tpr-containing domain 60 d1dcea1 not modelled 92.4 8 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 61 c3sz7A_ not modelled 92.4 7 PDB header:chaperone regulator Chain: A: PDB Molecule:hsc70 cochaperone (sgt); PDBTitle: crystal structure of the sgt2 tpr domain from aspergillus fumigatus 62 c3sf4B_ not modelled 91.8 17 PDB header:signaling protein/protein binding Chain: B: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn 63 c3fflC_ not modelled 91.7 8 PDB header:cell cycle Chain: C: PDB Molecule:anaphase-promoting complex subunit 7; PDBTitle: crystal structure of the n-terminal domain of anaphase-2 promoting complex subunit 7 64 c2avpA_ not modelled 91.5 19 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix 65 d1pc2a_ not modelled 91.5 8 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 66 c3beeB_ not modelled 91.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative yfre protein; PDBTitle: crystal structure of putative yfre protein from vibrio2 parahaemolyticus 67 c2xevB_ not modelled 90.9 22 PDB header:metal binding Chain: B: PDB Molecule:ybgf; PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf 68 c3ly8A_ not modelled 90.6 9 PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc 69 c1na3A_ not modelled 90.1 17 PDB header:de novo protein Chain: A: PDB Molecule:designed protein ctpr2; PDBTitle: design of stable alpha-helical arrays from an idealized tpr2 motif 70 d1elra_ not modelled 89.8 14 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 71 c2if4A_ not modelled 89.8 10 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 72 d1nzna_ not modelled 89.6 10 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 73 c3hymB_ not modelled 88.9 9 PDB header:cell cycle, ligase Chain: B: PDB Molecule:cell division cycle protein 16 homolog; PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure 74 c3k9iA_ not modelled 87.9 7 PDB header:protein binding Chain: A: PDB Molecule:bh0479 protein; PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution 75 c3qdnA_ not modelled 86.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 76 c1ihgA_ not modelled 85.0 11 PDB header:isomerase Chain: A: PDB Molecule:cyclophilin 40; PDBTitle: bovine cyclophilin 40, monoclinic form 77 c3q49B_ not modelled 85.0 14 PDB header:ligase/chaperone Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1; PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide 78 d1hh8a_ not modelled 84.4 13 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 79 c2vgxA_ not modelled 79.8 6 PDB header:chaperone Chain: A: PDB Molecule:chaperone sycd; PDBTitle: structure of the yersinia enterocolitica type iii secretion2 translocator chaperone sycd 80 c1xi4D_ not modelled 79.1 7 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:clathrin heavy chain; PDBTitle: clathrin d6 coat 81 d1y8ma1 not modelled 78.0 5 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 82 c3q15A_ not modelled 75.7 16 PDB header:hydrolase/kinase Chain: A: PDB Molecule:response regulator aspartate phosphatase h; PDBTitle: crystal structure of raph complexed with spo0f 83 c3nf1A_ not modelled 72.2 17 PDB header:motor protein, transport protein Chain: A: PDB Molecule:kinesin light chain 1; PDBTitle: crystal structure of the tpr domain of kinesin light chain 1 84 c3ceqB_ not modelled 70.0 6 PDB header:motor protein, transport protein Chain: B: PDB Molecule:kinesin light chain 2; PDBTitle: the tpr domain of human kinesin light chain 2 (hklc2) 85 c2l6jA_ not modelled 64.6 2 PDB header:protein binding Chain: A: PDB Molecule:tpr repeat-containing protein associated with hsp90; PDBTitle: tah1 complexed by meevd 86 c3draA_ not modelled 61.1 9 PDB header:transferase Chain: A: PDB Molecule:protein PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp 87 c3ulqA_ not modelled 54.0 10 PDB header:gene regulation/transcription activator Chain: A: PDB Molecule:response regulator aspartate phosphatase f; PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain 88 c1qz2B_ not modelled 51.3 11 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 89 d2pqrb1 not modelled 42.2 8 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 90 d1hz4a_ not modelled 34.8 9 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Transcription factor MalT domain III 91 c2hz8A_ not modelled 32.9 26 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 92 c2kc7A_ not modelled 32.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 93 c1kt0A_ not modelled 23.1 9 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 94 d1d8da_ not modelled 18.8 11 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 95 d2h6fa1 not modelled 15.5 10 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 96 c1tnoI_ not modelled 15.2 10 PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b 97 d1ya0a1 not modelled 14.5 20 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 98 c2v6yA_ not modelled 10.3 3 PDB header:hydrolase Chain: A: PDB Molecule:aaa family atpase, p60 katanin; PDBTitle: structure of the mit domain from a s. solfataricus vps4-2 like atpase 99 d1efub3 not modelled 9.8 0 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0