PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qkyA_

Fold library id	PDB Header	Molecule	Title
c3qkyA_	PDB header: membrane protein	Chain: A: PDB Molecule: outer membrane assembly lipoprotein yfio;	PDBTitle: crystal structure of rhodothermus marinus bamd

Links to external resources
Added to library: Sat Apr 23 09:19:20 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R H S S P Q E A F E R A M E F Y N Q G K Y D R A I E Y F K A V F T Y G R T H E W A A D A Q F Y L A R A Y Y Q N K E Y L L A A S E Y E R F I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
G G G
S
S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I Y Q I D P R V P Q A E Y E R A M C Y Y K L S P P Y E L D Q T D T R K A I E A F Q L F I D R Y P N H E L V D D A T Q K I R E L R A K L A R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q Y E A A R L Y E R R E L Y E A A A V T Y E A V F D A Y P D T P W A D D A L V G A M R A Y I A Y A E Q S V R A R Q P E R Y R R A V E L Y E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T T S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence L L Q I F P D S P L L R T A E E L Y T R A R Q R L T E L E G D A S L A Q G Q R Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	H	S	S	P	Q	E	A	F	E	R	A	M	E	F	Y	N	Q	G	K	Y	D	R	A	I	E	Y	F	K	A	V	F	T	Y	G	R	T	H	E	W	A	A	D	A	Q	F	Y	L	A	R	A	Y	Y	Q	N	K	E	Y	L	L	A	A	S	E	Y	E	R	F	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S														T	T													G	G	G		S		S	T	T															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	Y	Q	I	D	P	R	V	P	Q	A	E	Y	E	R	A	M	C	Y	Y	K	L	S	P	P	Y	E	L	D	Q	T	D	T	R	K	A	I	E	A	F	Q	L	F	I	D	R	Y	P	N	H	E	L	V	D	D	A	T	Q	K	I	R	E	L	R	A	K	L	A	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		T	T																			T	T	S																				T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	Y	E	A	A	R	L	Y	E	R	R	E	L	Y	E	A	A	A	V	T	Y	E	A	V	F	D	A	Y	P	D	T	P	W	A	D	D	A	L	V	G	A	M	R	A	Y	I	A	Y	A	E	Q	S	V	R	A	R	Q	P	E	R	Y	R	R	A	V	E	L	Y	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T																	T	T	S	T	T																		T	S		G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	L	L	Q	I	F	P	D	S	P	L	L	R	T	A	E	E	L	Y	T	R	A	R	Q	R	L	T	E	L	E	G	D	A	S	L	A	Q	G	Q	R	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		T																					T		T	T					G	G	G