PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2r5sB_

Fold library id	PDB Header	Molecule	Title
c2r5sB_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: uncharacterized protein vp0806;	PDBTitle: the crystal structure of a domain of protein vp08062 (unknown function) from vibrio parahaemolyticus rimd3 2210633

Links to external resources
Added to library: Tue Mar 16 12:31:51 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D E Q L L K Q V S E L L Q Q G E H A Q A L N V I Q T L S D E L Q S R G D V K L A K A D C L L E T K Q F E L A Q E L L A T I P L E Y Q D N S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
T S T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K S L I A K L E L H Q Q A A E S P E L K R L E Q E L A A N P D N F E L A C E L A V Q Y N Q V G R D E E A L E L L W N I L K V N L G A Q D G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
T T
T T
T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 .

Sequence V K K T F X D I L S A L G Q G N A I A S K Y R R Q L Y S I L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	E	Q	L	L	K	Q	V	S	E	L	L	Q	Q	G	E	H	A	Q	A	L	N	V	I	Q	T	L	S	D	E	L	Q	S	R	G	D	V	K	L	A	K	A	D	C	L	L	E	T	K	Q	F	E	L	A	Q	E	L	L	A	T	I	P	L	E	Y	Q	D	N	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T											T	T												S						T	S														T	T										T	T			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	S	L	I	A	K	L	E	L	H	Q	Q	A	A	E	S	P	E	L	K	R	L	E	Q	E	L	A	A	N	P	D	N	F	E	L	A	C	E	L	A	V	Q	Y	N	Q	V	G	R	D	E	E	A	L	E	L	L	W	N	I	L	K	V	N	L	G	A	Q	D	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S															T	T															T	T														T	T		T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Sequence	V	K	K	T	F	X	D	I	L	S	A	L	G	Q	G	N	A	I	A	S	K	Y	R	R	Q	L	Y	S	I	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S