PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3ulqA_

Fold library id	PDB Header	Molecule	Title
c3ulqA_	PDB header: gene regulation/transcription activator	Chain: A: PDB Molecule: response regulator aspartate phosphatase f;	PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain

Links to external resources
Added to library: Sun Jan 8 00:01:54 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S S S I G E K I N E W Y M Y I R R F S I P D A E Y L R R E I K Q E L D Q M E E D Q D L H L Y Y S L M E F R H N L M L E Y L E P L E K M R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
G G G G G S
G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E E Q P R L S D L L L E I D K K Q A R L T G L L E Y Y F N F F R G M Y E L D Q R E Y L S A I K F F K K A E S K L I F V K D R I E K A E F F F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S
T T T
T T G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K M S E S Y Y Y M K Q T Y F S M D Y A R Q A Y E I Y K E H E A Y N I R L L Q C H S L F A T N F L D L K Q Y E D A I S H F Q K A Y S M A E A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
S T T T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K Q P Q L M G R T L Y N I G L C K N S Q S Q Y E D A I P Y F K R A I A V F E E S N I L P S L P Q A Y F L I T Q I H Y K L G K I D K A H E Y H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
G G G T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S K G M A Y S Q K A G D V I Y L S E F E F L K S L Y L S G P D E E A I Q G F F D F L E S K M L Y A D L E D F A I D V A K Y Y H E R K N F Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S S
T T
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . .

Sequence A S A Y F L K V E Q V R Q L I Q G G V S L Y E I E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	S	S	I	G	E	K	I	N	E	W	Y	M	Y	I	R	R	F	S	I	P	D	A	E	Y	L	R	R	E	I	K	Q	E	L	D	Q	M	E	E	D	Q	D	L	H	L	Y	Y	S	L	M	E	F	R	H	N	L	M	L	E	Y	L	E	P	L	E	K	M	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T																		T	S																									G	G	G	G	G	S		G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	Q	P	R	L	S	D	L	L	L	E	I	D	K	K	Q	A	R	L	T	G	L	L	E	Y	Y	F	N	F	F	R	G	M	Y	E	L	D	Q	R	E	Y	L	S	A	I	K	F	F	K	K	A	E	S	K	L	I	F	V	K	D	R	I	E	K	A	E	F	F	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S														T																						T	T														T	T	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	M	S	E	S	Y	Y	Y	M	K	Q	T	Y	F	S	M	D	Y	A	R	Q	A	Y	E	I	Y	K	E	H	E	A	Y	N	I	R	L	L	Q	C	H	S	L	F	A	T	N	F	L	D	L	K	Q	Y	E	D	A	I	S	H	F	Q	K	A	Y	S	M	A	E	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																		T		S	T	T																		T	T																			T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	Q	P	Q	L	M	G	R	T	L	Y	N	I	G	L	C	K	N	S	Q	S	Q	Y	E	D	A	I	P	Y	F	K	R	A	I	A	V	F	E	E	S	N	I	L	P	S	L	P	Q	A	Y	F	L	I	T	Q	I	H	Y	K	L	G	K	I	D	K	A	H	E	Y	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																			T	T																			T	T		G	G	G															T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	K	G	M	A	Y	S	Q	K	A	G	D	V	I	Y	L	S	E	F	E	F	L	K	S	L	Y	L	S	G	P	D	E	E	A	I	Q	G	F	F	D	F	L	E	S	K	M	L	Y	A	D	L	E	D	F	A	I	D	V	A	K	Y	Y	H	E	R	K	N	F	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T																T	S	S																T	T																			T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Sequence	A	S	A	Y	F	L	K	V	E	Q	V	R	Q	L	I	Q	G	G	V	S	L	Y	E	I	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	S		S	S					S	S