PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2yhcA_

Fold library id	PDB Header	Molecule	Title
c2yhcA_	PDB header: membrane protein	Chain: A: PDB Molecule: upf0169 lipoprotein yfio;	PDBTitle: structure of bamd from e. coli

Links to external resources
Added to library: Sat Jun 4 09:20:53 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P P N E I Y A T A Q Q K L Q D G N W R Q A I T Q L E A L D N R Y P F G P Y S Q Q V Q L D L I Y A Y Y K N A D L P L A Q A A I D R F I R L N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T S T T T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T H P N I D Y V M Y M R G L T N M A L D D D P Q Q A R A A F S D F S K L V R G Y P N S Q Y T T D A T K R L V F L K D R L A K Y E Y S V A E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence Y T E R G A W V A V V N R V E G M L R D Y P D T Q A T R D A L P L M E N A Y R Q M Q M N A Q A E K V A K I I A A N S S N T L E H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T S T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T																	T	T	S	T	T															T	T																	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	H	P	N	I	D	Y	V	M	Y	M	R	G	L	T	N	M	A	L	D	D	D	P	Q	Q	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T																																		T	T		T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	Y	T	E	R	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D	Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M	Q	M	N	A	Q	A	E	K	V	A	K	I	I	A	A	N	S	S	N	T	L	E	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T																S	T	T	S																	T	T																	S						T	T