Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33924
DateThu Jan 5 11:52:48 GMT 2012
Unique Job IDa7f304782f22c829

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3sljA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
Confidence and coverage
Confidence:100.0% Coverage: 34%
293 residues ( 34% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
830 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MHQSGSVSLCRSAISVLVATALYSPIALASTVEYGETVDGVVLEKDIQLVYGTANNTKIN
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   .........70.........80.........90.........100.........110.........120
Sequence  PGGEQHIKEFGVSNNTEINGGYQYIEMNGAAEYSVLNDGYQIVQMGGAANQTTLNNGVLQ
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   .........130.........140.........150.........160.........170.........180
Sequence  VYGAANDTTIKGGRLIVEKDGGAVFVAIEKGGLLEVKEGGFAFAVDQKAGGAIKTTTRAM
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   .........190.........200.........210.........220.........230.........240
Sequence  EVFGTNRLGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTVTGVD
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   .........250.........260.........270.........280.........290.........300
Sequence  KKAGGKLIVSTNALEVSGPNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDKHA
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   .........310.........320.........330.........340.........350.........360
Sequence  TMQSLGKDTGTKVQANAVYDLGRSYQNGSITYSSKAISENMVINNGRANVWAGTMVNVSV
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   .........370.........380.........390.........400.........410.........420
Sequence  RGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVWTIIADIT
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   .........430.........440.........450.........460.........470.........480
Sequence  TTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNGNFYMRTDMA
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   .........490.........500.........510.........520.........530.........540
Sequence  NHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDIGTY
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   .........550.........560.........570.........580.........590.........600
Sequence  EYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSVKGVSYDT
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   .........610.........620.........630.........640.........650.........660
Sequence  AMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLIFGYSHSDIGFDR
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   .........670.........680.........690.........700.........710.........720
Sequence  GGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAH
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   .........730.........740.........750.........760.........770.........780
Sequence  VESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILRAEAGTAVSYHMDL
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   .........790.........800.........810.........820.........830.........840
Sequence  QNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQAGIRSSFTPTLSGHLS
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   .........850.........860...
Sequence  VSYGNGAGVESPWNTQAGVVWTF
Secondary structure 



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Disorder 


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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3slj chain A

3D model

Region: 563 - 863
Aligned: 293
Modelled: 301
Confidence: 100.0%
Identity: 15%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3aeh chain B

3D model

Region: 564 - 863
Aligned: 266
Modelled: 287
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 3qq2 chain C

3D model

Region: 598 - 863
Aligned: 248
Modelled: 252
Confidence: 100.0%
Identity: 23%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 3kvn chain A

3D model

Region: 564 - 863
Aligned: 291
Modelled: 300
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1uyn chain X

3D model

Region: 576 - 863
Aligned: 268
Modelled: 288
Confidence: 100.0%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 2qom chain B

3D model

Region: 586 - 863
Aligned: 261
Modelled: 278
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 1p4t chain A

3D model

Region: 678 - 863
Aligned: 150
Modelled: 173
Confidence: 99.2%
Identity: 21%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1qjp chain A

3D model

Region: 679 - 863
Aligned: 134
Modelled: 153
Confidence: 99.1%
Identity: 15%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1g90 chain A

3D model

Region: 679 - 863
Aligned: 161
Modelled: 185
Confidence: 99.1%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3nb3 chain C

3D model

Region: 679 - 863
Aligned: 134
Modelled: 153
Confidence: 99.1%
Identity: 15%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 2x27 chain X

3D model

Region: 675 - 863
Aligned: 182
Modelled: 189
Confidence: 99.1%
Identity: 9%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 2k0l chain A

3D model

Region: 679 - 863
Aligned: 171
Modelled: 185
Confidence: 99.1%
Identity: 19%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 2f1t chain B

3D model

Region: 679 - 863
Aligned: 164
Modelled: 175
Confidence: 98.9%
Identity: 10%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 2jmm chain A

3D model

Region: 679 - 863
Aligned: 146
Modelled: 168
Confidence: 98.9%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 1qj8 chain A

3D model

Region: 715 - 863
Aligned: 131
Modelled: 149
Confidence: 98.8%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3qra chain A

3D model

Region: 688 - 863
Aligned: 147
Modelled: 171
Confidence: 98.8%
Identity: 12%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2iwv chain D

3D model

Region: 594 - 863
Aligned: 239
Modelled: 256
Confidence: 98.4%
Identity: 12%
PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation

Phyre2

PDB 2lhf chain A

3D model

Region: 737 - 863
Aligned: 121
Modelled: 127
Confidence: 98.2%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2

PDB 2x4m chain D

3D model

Region: 667 - 863
Aligned: 194
Modelled: 197
Confidence: 98.0%
Identity: 12%
PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla

Phyre2

PDB 1t16 chain A

3D model

Region: 646 - 863
Aligned: 213
Modelled: 218
Confidence: 97.6%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Outer membrane protein transport protein

Phyre2

PDB 1dab chain A

3D model

Region: 29 - 561
Aligned: 529
Modelled: 529
Confidence: 93.9%
Identity: 17%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2
1

c3sljA_
2

c3aehB_
3

c3qq2C_
4

c3kvnA_
5

d1uynx_
6

c2qomB_
7

d1p4ta_
8

d1qjpa_
9

d1g90a_
10

c3nb3C_
11

c2x27X_
12

c2k0lA_
13

c2f1tB_
14

c2jmmA_
15

d1qj8a_
16

c3qraA_
17

c2iwvD_
18

c2lhfA_
19

c2x4mD_
20

d1t16a_
21



22



23



24



25



26



27



28



29



30

d1daba_
31



32



33



34



35



36



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71






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sljA_



100.0 15 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
2c3aehB_



100.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
3c3qq2C_



100.0 23 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
4c3kvnA_



100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
5d1uynx_



100.0 18 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
6c2qomB_



100.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
7d1p4ta_



99.2 21 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
8d1qjpa_



99.1 15 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
9d1g90a_



99.1 18 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
10c3nb3C_



99.1 15 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
11c2x27X_



99.1 9 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
12c2k0lA_



99.1 19 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
13c2f1tB_



98.9 10 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
14c2jmmA_



98.9 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
15d1qj8a_



98.8 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
16c3qraA_



98.8 12 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
17c2iwvD_



98.4 12 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
18c2lhfA_



98.2 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
19c2x4mD_



98.0 12 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
20d1t16a_



97.6 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
21c2wjqA_



not modelled 97.5 10 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
22d1i78a_



not modelled 97.5 13 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
23c3dwoX_



not modelled 97.1 11 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
24c3a2rX_



not modelled 97.1 12 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
25d2fgqx1



not modelled 96.6 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
26c3brzA_



not modelled 96.5 13 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
27c3bryB_



not modelled 96.4 11 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
28d3prna_



not modelled 96.1 26 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
29d2pora_



not modelled 94.8 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
30d1daba_



93.9 17 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
31c2iahA_



not modelled 93.5 14 PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
32d2zfga1



not modelled 92.1 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
33d1osma_



not modelled 91.5 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
34c2hdiA_



not modelled 87.7 10 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
35c3qlbA_



not modelled 85.6 10 PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
36d1phoa_



not modelled 84.2 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
37d1by5a_



not modelled 82.9 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
38c1xkwA_



not modelled 82.7 7 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
39d2vdfa1



not modelled 81.9 16 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
40d2gufa1



not modelled 78.5 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
41c3nsgA_



not modelled 76.3 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
42c3jtyB_



not modelled 65.8 14 PDB header:transport protein
Chain: B: PDB Molecule:benf-like porin;
PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
43c2gr7C_



not modelled 59.9 22 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
44d2gr7a1



not modelled 59.9 22 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
45c2ervA_



not modelled 55.2 14 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
46d2gr8a1



not modelled 52.4 22 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
47c3emoA_



not modelled 40.8 16 PDB header:membrane protein/cell adhesion
Chain: A: PDB Molecule:hia (adhesin);
PDBTitle: crystal structure of transmembrane hia 973-1098
48c2o4vA_



not modelled 39.5 11 PDB header:membrane protein
Chain: A: PDB Molecule:porin p;
PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane
49c1po3A_



not modelled 38.3 10 PDB header:membrane protein
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca
PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate
50c3h09B_



not modelled 30.5 14 PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease
51c3dzmB_



not modelled 20.8 14 PDB header:unknown function
Chain: B: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27
52c2k4tA_



not modelled 20.8 10 PDB header:membrane protein,apoptosis
Chain: A: PDB Molecule:voltage-dependent anion-selective channel
PDBTitle: solution structure of human vdac-1 in ldao micelles
53c2grxB_



not modelled 19.4 12 PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
54c2qtkB_



not modelled 18.9 8 PDB header:membrane protein
Chain: B: PDB Molecule:probable porin;
PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa
55c3ml3A_



not modelled 18.4 15 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
56d2f0ca1



not modelled 17.5 24 Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
57c3cslB_



not modelled 15.7 16 PDB header:membrane protein/heme binding protein
Chain: B: PDB Molecule:hasr protein;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme
58c3fhhA_



not modelled 12.8 10 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
59c3qteA_



not modelled 9.1 50 PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-6;
PDBTitle: crystal structure of human alpha-defensin 6 (h27w mutant)
60c2y0hA_



not modelled 8.7 14 PDB header:transport protein
Chain: A: PDB Molecule:probable porin;
PDBTitle: crystal structure of pseudomonas aeruginosa opdl
61c1xkhC_



not modelled 8.5 11 PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
62c1qd6C_



not modelled 8.4 14 PDB header:membrane protein
Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla));
PDBTitle: outer membrane phospholipase a from escherichia coli
63c3rbhC_



not modelled 8.2 13 PDB header:transport protein
Chain: C: PDB Molecule:alginate production protein alge;
PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
64d1bf2a1



not modelled 8.0 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
65c1al0B_



not modelled 7.4 27 PDB header:virus
Chain: B: PDB Molecule:scaffolding protein gpb;
PDBTitle: procapsid of bacteriophage phix174
66c2y0lA_



not modelled 6.4 9 PDB header:transport protein
Chain: A: PDB Molecule:cis-aconitate porin opdh;
PDBTitle: crystal structure of pseudomonas aeruginosa opdo
67c2jxpA_



not modelled 6.2 9 PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein b;
PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a
68d1thqa_



not modelled 5.9 15 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane enzyme PagP
69d1a0tp_



not modelled 5.7 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Maltoporin-like
70d1jmxa4



not modelled 5.6 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
71d1nrja_



not modelled 5.6 8 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0