Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6P5
DateThu Jan 5 11:03:38 GMT 2012
Unique Job IDa6ec9b0cc97d8e83

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2hjgA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
Confidence and coverage
Confidence:100.0% Coverage: 81%
397 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI
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Disorder  ???
























































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   .........70.........80.........90.........100.........110.........120
Sequence  DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKT
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Disorder 

???






















































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   .........130.........140.........150.........160.........170.........180
Sequence  DGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWA
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?




















?






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   .........190.........200.........210.........220.........230.........240
Sequence  QFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS
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?















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   .........250.........260.........270.........280.........290.........300
Sequence  IYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISD
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Disorder 




















???????































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   .........310.........320.........330.........340.........350.........360
Sequence  QDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSG
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   .........370.........380.........390.........400.........410.........420
Sequence  VGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV
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?




















?????

















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   .........430.........440.........450.........460.........470.........480
Sequence  VIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRK
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???????????????????

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   .........490
Sequence  RLMKHIKKNK
Secondary structure 


SS confidence 









Disorder 





????
Disorder confidence 









 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2hjg chain A

3D model

Region: 3 - 461
Aligned: 397
Modelled: 431
Confidence: 100.0%
Identity: 40%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp

Phyre2

PDB 1mky chain A

3D model

Region: 4 - 461
Aligned: 400
Modelled: 410
Confidence: 100.0%
Identity: 36%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 2e87 chain A

3D model

Region: 180 - 391
Aligned: 204
Modelled: 212
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 1wf3 chain A

3D model

Region: 3 - 199
Aligned: 197
Modelled: 197
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8

Phyre2

PDB 1xzq chain A

3D model

Region: 4 - 164
Aligned: 159
Modelled: 161
Confidence: 100.0%
Identity: 37%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 3geh chain A

3D model

Region: 3 - 165
Aligned: 141
Modelled: 143
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn

Phyre2

PDB 2dy1 chain A domain 2

3D model

Region: 1 - 371
Aligned: 245
Modelled: 245
Confidence: 100.0%
Identity: 26%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1ega chain B

3D model

Region: 3 - 207
Aligned: 205
Modelled: 205
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era

Phyre2

PDB 3iev chain A

3D model

Region: 3 - 207
Aligned: 205
Modelled: 205
Confidence: 100.0%
Identity: 33%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 1mky chain A domain 3

3D model

Region: 378 - 461
Aligned: 80
Modelled: 84
Confidence: 100.0%
Identity: 21%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Probable GTPase Der, C-terminal domain
Family: Probable GTPase Der, C-terminal domain

Phyre2

PDB 1udx chain A

3D model

Region: 1 - 175
Aligned: 173
Modelled: 175
Confidence: 100.0%
Identity: 25%
PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8

Phyre2

PDB 2qth chain A

3D model

Region: 54 - 376
Aligned: 274
Modelled: 288
Confidence: 100.0%
Identity: 15%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp

Phyre2

PDB 3k53 chain B

3D model

Region: 1 - 188
Aligned: 185
Modelled: 188
Confidence: 100.0%
Identity: 28%
PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus

Phyre2

PDB 2bv3 chain A domain 2

3D model

Region: 5 - 371
Aligned: 242
Modelled: 252
Confidence: 100.0%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1lnz chain A

3D model

Region: 1 - 175
Aligned: 173
Modelled: 175
Confidence: 100.0%
Identity: 25%
PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein

Phyre2

PDB 1wb1 chain C

3D model

Region: 199 - 374
Aligned: 165
Modelled: 176
Confidence: 100.0%
Identity: 20%
PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp

Phyre2

PDB 3lx8 chain A

3D model

Region: 1 - 198
Aligned: 193
Modelled: 198
Confidence: 99.9%
Identity: 21%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus

Phyre2

PDB 3a1v chain B

3D model

Region: 4 - 193
Aligned: 184
Modelled: 190
Confidence: 99.9%
Identity: 22%
PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form

Phyre2

PDB 1kk3 chain A

3D model

Region: 199 - 380
Aligned: 171
Modelled: 182
Confidence: 99.9%
Identity: 22%
PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+

Phyre2

PDB 2ywf chain A

3D model

Region: 198 - 370
Aligned: 160
Modelled: 173
Confidence: 99.9%
Identity: 24%
PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus

Phyre2
1

c2hjgA_
2

c1mkyA_
3

c2e87A_
4

c1wf3A_
5

c1xzqA_
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c3gehA_
7

d2dy1a2
8

c1egaB_
9

c3ievA_
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d1mkya3
11

c1udxA_
12

c2qthA_
13

c3k53B_
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d2bv3a2
15

c1lnzA_
16

c1wb1C_
17

c3lx8A_
18

c3a1vB_
19

c1kk3A_
20

c2ywfA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hjgA_



100.0 40 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
2c1mkyA_



100.0 36 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
3c2e87A_



100.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
4c1wf3A_



100.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
5c1xzqA_



100.0 37 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
6c3gehA_



100.0 34 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
7d2dy1a2



100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
8c1egaB_



100.0 23 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
9c3ievA_



100.0 33 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
10d1mkya3



100.0 21 Fold:Alpha-lytic protease prodomain-like
Superfamily:Probable GTPase Der, C-terminal domain
Family:Probable GTPase Der, C-terminal domain
11c1udxA_



100.0 25 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
12c2qthA_



100.0 15 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
13c3k53B_



100.0 28 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
14d2bv3a2



100.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
15c1lnzA_



100.0 25 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
16c1wb1C_



100.0 20 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
17c3lx8A_



99.9 21 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
18c3a1vB_



99.9 22 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
19c1kk3A_



99.9 22 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
20c2ywfA_



99.9 24 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
21c3i8sC_



not modelled 99.9 22 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
22c3izyP_



not modelled 99.9 20 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
23c3ibyA_



not modelled 99.9 21 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
24c1g7tA_



not modelled 99.9 20 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
25c3degC_



not modelled 99.9 25 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
26c1zo1I_



not modelled 99.9 20 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
27c2plfA_



not modelled 99.9 24 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
28d1f60a3



not modelled 99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
29c2bvnB_



not modelled 99.9 20 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
30d1h65a_



not modelled 99.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
31d1ni3a1



not modelled 99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
32d1tq4a_



not modelled 99.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
33c2j3eA_



not modelled 99.9 18 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
34c1d2eA_



not modelled 99.9 18 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
35c3qq5A_



not modelled 99.9 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
36c1zunB_



not modelled 99.9 23 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
37c1ni3A_



not modelled 99.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:ychf gtp-binding protein;
PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase
38c1mj1A_



not modelled 99.9 18 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
39c2dy1A_



not modelled 99.9 31 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
40d1svia_



not modelled 99.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
41c2qptA_



not modelled 99.9 22 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
42c3cb4D_



not modelled 99.9 25 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
43c2elfA_



not modelled 99.9 20 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
44c2xexA_



not modelled 99.9 28 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
45c2wwwB_



not modelled 99.9 19 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
46d1puja_



not modelled 99.9 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
47c2bm0A_



not modelled 99.9 25 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
48c3md0A_



not modelled 99.9 15 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
49c2xtpA_



not modelled 99.9 16 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
50c2rdo7_



not modelled 99.9 15 PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
51d2p67a1



not modelled 99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
52d1zunb3



not modelled 99.9 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53d2qm8a1



not modelled 99.9 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
54c1jalA_



not modelled 99.9 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
55d1jala1



not modelled 99.9 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
56c3pqcA_



not modelled 99.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
57c2xtnA_



not modelled 99.9 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
58c3nxsA_



not modelled 99.9 18 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
59c1skqB_



not modelled 99.9 21 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
60c3p27A_



not modelled 99.9 20 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
61c2ohfA_



not modelled 99.9 28 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein 9;
PDBTitle: crystal structure of human ola1 in complex with amppcp
62c3ec1A_



not modelled 99.9 27 PDB header:hydrolase, signaling protein
Chain: A: PDB Molecule:yqeh gtpase;
PDBTitle: structure of yqeh gtpase from geobacillus stearothermophilus2 (an atnos1 / atnoa1 ortholog)
63c2dwqB_



not modelled 99.9 37 PDB header:hydrolase
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: thermus thermophilus ychf gtp-binding protein
64c1g7cA_



not modelled 99.9 21 PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp
65d1egaa1



not modelled 99.9 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
66d1wf3a1



not modelled 99.9 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67c3izq1_



not modelled 99.9 24 PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
68c2dykB_



not modelled 99.9 39 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
69d2c78a3



not modelled 99.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
70c3mmpC_



not modelled 99.8 21 PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
71c3r7wC_



not modelled 99.8 17 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
72c3agqA_



not modelled 99.8 21 PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii
73c2h5eB_



not modelled 99.8 20 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
74c3lvrE_



not modelled 99.8 16 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
75c1zn0B_



not modelled 99.8 26 PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
76d1n0ua2



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77c3lxwA_



not modelled 99.8 17 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
78d1puia_



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
79c3tr5C_



not modelled 99.8 23 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
80d1mkya2



not modelled 99.8 40 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
81c2qu8A_



not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
82d1kk1a3



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
83c3o47A_



not modelled 99.8 18 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
84c3c5hA_



not modelled 99.8 17 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
85c2wkqA_



not modelled 99.8 19 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
86c3lxxA_



not modelled 99.8 19 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
87c3p1jC_



not modelled 99.8 19 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
88d1d2ea3



not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
89c2qagC_



not modelled 99.8 22 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
90c2wjjB_



not modelled 99.8 27 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
91d1lnza2



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92c2qa5A_



not modelled 99.8 26 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
93d1r5ba3



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94c1s0uA_



not modelled 99.8 18 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
95c3h2yA_



not modelled 99.8 22 PDB header:hydrolase
Chain: A: PDB Molecule:gtpase family protein;
PDBTitle: crystal structure of yqeh gtpase from bacillus anthracis with dgdp2 bound
96c1r5nA_



not modelled 99.8 28 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp
97d1wb1a4



not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98c3cnlA_



not modelled 99.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of gnp-bound ylqf from t. maritima
99c3p1jB_



not modelled 99.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
100c2j69D_



not modelled 99.8 23 PDB header:hydrolase
Chain: D: PDB Molecule:bacterial dynamin-like protein;
PDBTitle: bacterial dynamin-like protein bdlp
101d2gj8a1



not modelled 99.8 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
102d1jwyb_



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103d1wxqa1



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104d1efca3



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
105c2q3fB_



not modelled 99.8 14 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
106c2rexD_



not modelled 99.8 16 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
107d1jnya3



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108c2wsmB_



not modelled 99.8 18 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
109d2cxxa1



not modelled 99.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
110c3a1wA_



not modelled 99.8 26 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
111d1s0ua3



not modelled 99.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
112d2qn6a3



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113d1zcaa2



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
114d1udxa2



not modelled 99.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115c3t5dC_



not modelled 99.8 21 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
116d1shza2



not modelled 99.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
117d1g7sa4



not modelled 99.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
118c2x2fD_



not modelled 99.7 24 PDB header:hydrolase
Chain: D: PDB Molecule:dynamin-1;
PDBTitle: dynamin 1 gtpase dimer, short axis form
119c2qagB_



not modelled 99.7 20 PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7
120d1mkya1



not modelled 99.7 37 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0