PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3cnlA_

Fold library id	PDB Header	Molecule	Title
c3cnlA_	PDB header: signaling protein	Chain: A: PDB Molecule: putative uncharacterized protein;	PDBTitle: crystal structure of gnp-bound ylqf from t. maritima

Links to external resources
Added to library: Tue Mar 16 13:59:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K A K R Q I K D L L R L V N T V V E V R D A R A P F A T S A Y G V D F S R K E T I I L L N K V D I A D E K T T K K W V E F F K K Q G K R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S T T S T T T T S
T T S
T T S
G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I T T H K G E P R K V L L K K L S F D R L A R V L I V G V P N T G K S T I I N K L K G K R A K G I Q W F S L E N G V K I L D T P G I L Y K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
S T T S S T T
S
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I F S E D L A A K L L L V G S L P V E R I E D Q R I F E R A F E I F A R S I G I E S S F S E F F E D F A R K R G L L K K G G V P D I E R A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
G G G
T
T T
B
G G G
B

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence M L F F T E V A Q G K A G R V S F E R P E D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	A	K	R	Q	I	K	D	L	L	R	L	V	N	T	V	V	E	V	R	D	A	R	A	P	F	A	T	S	A	Y	G	V	D	F	S	R	K	E	T	I	I	L	L	N	K	V	D	I	A	D	E	K	T	T	K	K	W	V	E	F	F	K	K	Q	G	K	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								T	T		S								T	T	S	T	T	T	T	S		T	T	S			T	T	S									G	G	G	S															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	T	T	H	K	G	E	P	R	K	V	L	L	K	K	L	S	F	D	R	L	A	R	V	L	I	V	G	V	P	N	T	G	K	S	T	I	I	N	K	L	K	G	K	R	A	K	G	I	Q	W	F	S	L	E	N	G	V	K	I	L	D	T	P	G	I	L	Y	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S													T	T								S	T	T	S	S										T	T					S						T	T	S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	F	S	E	D	L	A	A	K	L	L	L	V	G	S	L	P	V	E	R	I	E	D	Q	R	I	F	E	R	A	F	E	I	F	A	R	S	I	G	I	E	S	S	F	S	E	F	F	E	D	F	A	R	K	R	G	L	L	K	K	G	G	V	P	D	I	E	R	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S										T	T	S	S		G	G	G																			T																T	T		B		G	G	G		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	M	L	F	F	T	E	V	A	Q	G	K	A	G	R	V	S	F	E	R	P	E	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T		S			S			T	T