Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00864
DateThu Jan 5 10:56:57 GMT 2012
Unique Job IDa44977566a8bb9ad

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1jqna_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
Confidence and coverage
Confidence:100.0% Coverage: 99%
874 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTL
Secondary structure 
SS confidence 
Disorder  ????
????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSED
Secondary structure 
SS confidence 
Disorder 
?????????
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQ
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKLPVEF
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  ALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACY
Secondary structure 
SS confidence 
Disorder 
????????
?
????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYES
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  WSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTP
Secondary structure 
SS confidence 
Disorder 
?????????
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  SDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMVMIG
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  YSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQP
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  PGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDEL
Secondary structure 
SS confidence 
Disorder 
??
????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  SVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFA
Secondary structure 
SS confidence 
Disorder 
?????
?????????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  WTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  YYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLN
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........850.........860.........870.........880...
Sequence  VLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG
Secondary structure 
SS confidence 
Disorder 
??????????
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1jqn chain A

3D model

Region: 4 - 883
Aligned: 874
Modelled: 880
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate carboxylase

Phyre2

PDB 1jqo chain A

3D model

Region: 10 - 883
Aligned: 861
Modelled: 874
Confidence: 100.0%
Identity: 42%
PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize

Phyre2

PDB 1jqo chain A

3D model

Region: 10 - 883
Aligned: 861
Modelled: 874
Confidence: 100.0%
Identity: 42%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate carboxylase

Phyre2

PDB 3odm chain E

3D model

Region: 395 - 880
Aligned: 455
Modelled: 458
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: archaeal-type phosphoenolpyruvate carboxylase

Phyre2

PDB 1e0t chain A domain 2

3D model

Region: 378 - 577
Aligned: 160
Modelled: 169
Confidence: 97.3%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2

PDB 1pkl chain A domain 2

3D model

Region: 378 - 577
Aligned: 160
Modelled: 169
Confidence: 97.2%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2

PDB 1a3x chain A domain 2

3D model

Region: 378 - 577
Aligned: 160
Modelled: 171
Confidence: 97.0%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2

PDB 2g50 chain A domain 2

3D model

Region: 378 - 577
Aligned: 160
Modelled: 169
Confidence: 96.5%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2

PDB 2vwt chain A

3D model

Region: 378 - 580
Aligned: 162
Modelled: 184
Confidence: 96.5%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex

Phyre2

PDB 1dxe chain A

3D model

Region: 378 - 580
Aligned: 162
Modelled: 184
Confidence: 95.9%
Identity: 14%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2

PDB 1liu chain A domain 2

3D model

Region: 469 - 577
Aligned: 90
Modelled: 109
Confidence: 95.3%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2

PDB 2v5j chain B

3D model

Region: 378 - 580
Aligned: 162
Modelled: 174
Confidence: 95.3%
Identity: 18%
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch

Phyre2

PDB 3qqw chain C

3D model

Region: 448 - 576
Aligned: 118
Modelled: 129
Confidence: 95.1%
Identity: 16%
PDB header:lyase
Chain: C: PDB Molecule:putative citrate lyase;
PDBTitle: crystal structure of a hypothetical lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution

Phyre2

PDB 1izc chain A

3D model

Region: 405 - 578
Aligned: 153
Modelled: 174
Confidence: 94.7%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2

PDB 1izc chain A

3D model

Region: 405 - 578
Aligned: 153
Modelled: 174
Confidence: 94.7%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase

Phyre2

PDB 3qz6 chain A

3D model

Region: 379 - 578
Aligned: 159
Modelled: 171
Confidence: 94.2%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2

Phyre2

PDB 3r4i chain B

3D model

Region: 448 - 576
Aligned: 118
Modelled: 129
Confidence: 93.8%
Identity: 18%
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution

Phyre2

PDB 1sgj chain B

3D model

Region: 469 - 576
Aligned: 95
Modelled: 108
Confidence: 92.3%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase, beta subunit;
PDBTitle: crystal structure of citrate lyase beta subunit

Phyre2

PDB 1sgj chain A

3D model

Region: 469 - 576
Aligned: 95
Modelled: 108
Confidence: 92.2%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2

PDB 1u5h chain A

3D model

Region: 458 - 576
Aligned: 98
Modelled: 119
Confidence: 91.5%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2
1
d1jqna_
2
c1jqoA_
3
d1jqoa_
4
c3odmE_
5
d1e0ta2
6
d1pkla2
7
d1a3xa2
8
d2g50a2
9
c2vwtA_
10
d1dxea_
11
d1liua2
12
c2v5jB_
13
c3qqwC_
14
d1izca_
15
c1izcA_
16
c3qz6A_
17
c3r4iB_
18
c1sgjB_
19
d1sgja_
20
d1u5ha_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
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44
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46
47
48
49
50
51
52
53
54
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58
59
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61
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63
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67
68
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73
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95
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1jqna_
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
2c1jqoA_
100.0 42 PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
3d1jqoa_
100.0 42 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
4c3odmE_
100.0 17 PDB header:lyase
Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: archaeal-type phosphoenolpyruvate carboxylase
5d1e0ta2
97.3 18 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
6d1pkla2
97.2 19 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
7d1a3xa2
97.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
8d2g50a2
96.5 18 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
9c2vwtA_
96.5 21 PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
10d1dxea_
95.9 14 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
11d1liua2
95.3 23 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
12c2v5jB_
95.3 18 PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
13c3qqwC_
95.1 16 PDB header:lyase
Chain: C: PDB Molecule:putative citrate lyase;
PDBTitle: crystal structure of a hypothetical lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution
14d1izca_
94.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
15c1izcA_
94.7 17 PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
16c3qz6A_
94.2 18 PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
17c3r4iB_
93.8 18 PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution
18c1sgjB_
92.3 17 PDB header:lyase
Chain: B: PDB Molecule:citrate lyase, beta subunit;
PDBTitle: crystal structure of citrate lyase beta subunit
19d1sgja_
92.2 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
20d1u5ha_
91.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
21c1u5vA_
not modelled 90.5 17 PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis
22c1a3wB_
not modelled 88.9 28 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
23c1pklB_
not modelled 88.6 26 PDB header:transferase
Chain: B: PDB Molecule:protein (pyruvate kinase);
PDBTitle: the structure of leishmania pyruvate kinase
24c3pugA_
not modelled 88.4 14 PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate
25c3qllB_
not modelled 87.5 17 PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of ripc from yersinia pestis
26c1e0tD_
not modelled 87.2 30 PDB header:phosphotransferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: r292d mutant of e. coli pyruvate kinase
27c3eoeC_
not modelled 86.3 26 PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
28c2vgbB_
not modelled 83.9 27 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase isozymes r/l;
PDBTitle: human erythrocyte pyruvate kinase
29c3t07D_
not modelled 83.8 29 PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
30c1aqfB_
not modelled 83.8 26 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate
31c3e0vB_
not modelled 81.6 22 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions
32c3cuzA_
not modelled 78.1 18 PDB header:transferase
Chain: A: PDB Molecule:malate synthase a;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
33c1t5aB_
not modelled 77.5 27 PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme;
PDBTitle: human pyruvate kinase m2
34c3khdC_
not modelled 76.9 24 PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pff1300w.
35c3ma8A_
not modelled 75.7 24 PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum
36c2e28A_
not modelled 74.6 24 PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus
37d1wdpa1
not modelled 62.5 33 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
38c1j0yD_
not modelled 61.7 24 PDB header:hydrolase
Chain: D: PDB Molecule:beta-amylase;
PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose
39c2xfyA_
not modelled 61.5 40 PDB header:hydrolase
Chain: A: PDB Molecule:beta-amylase;
PDBTitle: crystal structure of barley beta-amylase complexed with2 alpha-cyclodextrin
40c1q7tA_
not modelled 59.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein rv1170;
PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis
41d1q74a_
not modelled 59.4 19 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
42c2yxgD_
not modelled 58.0 9 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
43c3godA_
not modelled 52.9 17 PDB header:immune system
Chain: A: PDB Molecule:cas1;
PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense
44c1ahuB_
not modelled 52.6 25 PDB header:flavoenzyme
Chain: B: PDB Molecule:vanillyl-alcohol oxidase;
PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol
45c3tekA_
not modelled 52.2 28 PDB header:dna binding protein
Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein;
PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism
46c3fluD_
not modelled 50.3 12 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
47c3nkdB_
not modelled 50.1 23 PDB header:immune system
Chain: B: PDB Molecule:crispr-associated protein cas1;
PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12
48d1vema2
not modelled 48.9 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49d2hf5a1
not modelled 47.2 47 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
50c3io3A_
not modelled 46.8 23 PDB header:chaperone
Chain: A: PDB Molecule:deha2d07832p;
PDBTitle: get3 with adp from d. hansenii in closed form
51c2yr1B_
not modelled 44.5 21 PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426
52d1wota_
not modelled 44.1 28 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
53c2k7rA_
not modelled 43.3 11 PDB header:replication
Chain: A: PDB Molecule:primosomal protein dnai;
PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai
54d2csua1
not modelled 42.8 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
55c3cuxA_
not modelled 42.0 16 PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
56c3noeA_
not modelled 39.8 12 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
57d1b1ya_
not modelled 39.4 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
58c3d0cB_
not modelled 38.8 4 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution
59d1fa2a_
not modelled 36.1 30 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
60c3cyqM_
not modelled 33.3 12 PDB header:membrane protein
Chain: M: PDB Molecule:chemotaxis protein motb;
PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid
61c3e96B_
not modelled 33.3 7 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii
62d1fp3a_
not modelled 32.5 12 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
63d1bg5a1
not modelled 32.2 14 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
64d1scta_
not modelled 31.1 12 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
65d1rd5a_
not modelled 28.9 18 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
66c2o98P_
not modelled 27.6 29 PDB header:protein binding
Chain: P: PDB Molecule:plasma membrane h+ atpase;
PDBTitle: structure of the 14-3-3 / h+-atpase plant complex
67c3h8hA_
not modelled 27.6 43 PDB header:transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase ring2;
PDBTitle: structure of the c-terminal domain of human rnf2/ring1b;
68c3lfxE_
not modelled 27.3 16 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima
69d1a9xa1
not modelled 27.1 19 Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
70d1z7aa1
not modelled 26.9 13 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:PA1517-like
71c2gljR_
not modelled 26.8 21 PDB header:hydrolase
Chain: R: PDB Molecule:
PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum
72c3si9B_
not modelled 25.2 12 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
73c3ibgF_
not modelled 24.9 17 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
74c2ehbD_
not modelled 24.8 19 PDB header:signalling protein/transferase
Chain: D: PDB Molecule:cbl-interacting serine/threonine-protein kinase 24;
PDBTitle: the structure of the c-terminal domain of the protein kinase atsos22 bound to the calcium sensor atsos3
75d2r8ba1
not modelled 24.4 50 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase/thioesterase 1
76c3u0vA_
not modelled 24.4 50 PDB header:hydrolase
Chain: A: PDB Molecule:lysophospholipase-like protein 1;
PDBTitle: crystal structure analysis of human lyplal1
77d1p4ca_
not modelled 24.2 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
78c2hmcA_
not modelled 24.1 7 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
79d2vl8a1
not modelled 23.7 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycosylating toxin catalytic domain-like
80d1hzfa_
not modelled 23.5 26 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
81c1hzfA_
not modelled 23.5 26 PDB header:immune system
Chain: A: PDB Molecule:complement factor c4a;
PDBTitle: c4adg fragment of human complement factor c4a
82c3og9A_
not modelled 23.4 50 PDB header:hydrolase
Chain: A: PDB Molecule:protein yahd a copper inducible hydrolase;
PDBTitle: structure of yahd with malic acid
83d1gtma1
not modelled 23.4 41 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
84d1xnya1
not modelled 22.7 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
85c2gedB_
not modelled 22.6 30 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
86c3epmB_
not modelled 22.4 21 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiamine biosynthesis protein thic;
PDBTitle: crystal structure of caulobacter crescentus thic
87c2cdh1_
not modelled 22.4 11 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
88d1k0ma1
not modelled 21.9 11 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
89d1vrga1
not modelled 21.7 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
90d1z1za1
not modelled 21.6 30 Fold:Phage tail protein-like
Superfamily:Phage tail protein-like
Family:Lambda phage gpU-like
91d1gzda_
not modelled 21.3 18 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
92d1fj2a_
not modelled 21.1 30 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase/thioesterase 1
93d1jmsa3
not modelled 21.1 18 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
94c3pv9D_
not modelled 20.9 20 PDB header:immune system
Chain: D: PDB Molecule:putative uncharacterized protein ph1245;
PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii
95d1zl0a2
not modelled 20.3 36 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
96c3dz1A_
not modelled 20.1 9 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution
97d1auoa_
not modelled 19.9 30 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase/thioesterase 1
98d1xhoa_
not modelled 19.7 15 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
99c1xhoB_
not modelled 19.7 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: chorismate mutase from clostridium thermocellum cth-682

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0