PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pugA_

Fold library id	PDB Header	Molecule	Title
c3pugA_	PDB header: transferase	Chain: A: PDB Molecule: malate synthase;	PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate

Links to external resources
Added to library: Sat Jun 4 09:12:01 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E R R H D R E F V R T F F T S P T A V E D D S A K M L R R A A G L R G M Q A P D V W V P D N E D A T A P S M R D E G A E N I V E V I S E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
T T T T
G G G S
S S S T T S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A E F P G E I H P R M V W H R D S P E T R Y Q G F Q H M L D I T D P E R G A V E H I H G F V I P E V G G I D D W K K A D E F F T I V E H E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
B
T T
T
G G G S
G G G
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H G L D E G S L A M S V I I E S G E A E L A M G D L R D E M G K P T N N L E R L F L L V D G E V D Y T K D M R A M T P T G E L P A W P E L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S G G G T T S T T
G G G
T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence H N T S R G A S A A G C V A V D G P Y D D I R D V E G Y R E R M T D N Q A K G M L G I W S L T P G Q V V E A N T S P L P P K T G S W L L D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T T
S S T T S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . .

Sequence E L L G L T S Y V P S M D D I V D S M E E F E W D E A T Y Q A A M T P I S L F Q D V Y E N R P D Q H E E L E E R Y G A G V V E R A M E V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	R	R	H	D	R	E	F	V	R	T	F	F	T	S	P	T	A	V	E	D	D	S	A	K	M	L	R	R	A	A	G	L	R	G	M	Q	A	P	D	V	W	V	P	D	N	E	D	A	T	A	P	S	M	R	D	E	G	A	E	N	I	V	E	V	I	S	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		S										S						T	T							T	T			G	G	G	S		S						S	S	T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	E	F	P	G	E	I	H	P	R	M	V	W	H	R	D	S	P	E	T	R	Y	Q	G	F	Q	H	M	L	D	I	T	D	P	E	R	G	A	V	E	H	I	H	G	F	V	I	P	E	V	G	G	I	D	D	W	K	K	A	D	E	F	F	T	I	V	E	H	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G			S					B					T	T																T		G	G	G	S		G	G	G								S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	G	L	D	E	G	S	L	A	M	S	V	I	I	E	S	G	E	A	E	L	A	M	G	D	L	R	D	E	M	G	K	P	T	N	N	L	E	R	L	F	L	L	V	D	G	E	V	D	Y	T	K	D	M	R	A	M	T	P	T	G	E	L	P	A	W	P	E	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			T	T		S								S							G	G	G					T	T	S	T	T			G	G	G															T	T				S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	N	T	S	R	G	A	S	A	A	G	C	V	A	V	D	G	P	Y	D	D	I	R	D	V	E	G	Y	R	E	R	M	T	D	N	Q	A	K	G	M	L	G	I	W	S	L	T	P	G	Q	V	V	E	A	N	T	S	P	L	P	P	K	T	G	S	W	L	L	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T											T	T														T	T	T							S	S										T	T	S			S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Sequence	E	L	L	G	L	T	S	Y	V	P	S	M	D	D	I	V	D	S	M	E	E	F	E	W	D	E	A	T	Y	Q	A	A	M	T	P	I	S	L	F	Q	D	V	Y	E	N	R	P	D	Q	H	E	E	L	E	E	R	Y	G	A	G	V	V	E	R	A	M	E	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	G	G	G																																																													T	T