PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qllB_

Fold library id	PDB Header	Molecule	Title
c3qllB_	PDB header: lyase	Chain: B: PDB Molecule: citrate lyase;	PDBTitle: crystal structure of ripc from yersinia pestis

Links to external resources
Added to library: Sat Jan 14 21:29:23 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T Y Q T R S W L F T P A T R G A D V A I I D L E D S V S Q A D K E Q A R Q K A I S L P L A L R I N G L D T R A G I E D I H A L L E C G S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S
S T T S
G G G
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P D Y L V L P K T E S A A H L Q I L D R L X X F A D T R L I G I I E S V R G L N A V E S I A A A T P K L A G L I F G A A D X A A D I G A A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S T T S
T T
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T W E P L A L A R A R L V S A C A X N G I P A I D A P F F D V H D V S G L Q S E T L R A S D F G F S A K A A I H P A Q I S T I N T L F T P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T G G G T
S
S S
T
S S G G G T S

. . . . .

Sequence A A E I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	Y	Q	T	R	S	W	L	F	T	P	A	T	R	G	A	D	V	A	I	I	D	L	E	D	S	V	S	Q	A	D	K	E	Q	A	R	Q	K	A	I	S	L	P	L	A	L	R	I	N	G	L	D	T	R	A	G	I	E	D	I	H	A	L	L	E	C	G	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G									S					S							S	T	T	S		G	G	G																				T	T	S													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	D	Y	L	V	L	P	K	T	E	S	A	A	H	L	Q	I	L	D	R	L	X	X	F	A	D	T	R	L	I	G	I	I	E	S	V	R	G	L	N	A	V	E	S	I	A	A	A	T	P	K	L	A	G	L	I	F	G	A	A	D	X	A	A	D	I	G	A	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					S	S			S																								S						T						T	S		T	T																T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	W	E	P	L	A	L	A	R	A	R	L	V	S	A	C	A	X	N	G	I	P	A	I	D	A	P	F	F	D	V	H	D	V	S	G	L	Q	S	E	T	L	R	A	S	D	F	G	F	S	A	K	A	A	I	H	P	A	Q	I	S	T	I	N	T	L	F	T	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	G	G	G															T									S		S	S																T							S	S	G	G	G								T	S
	.	.	.	.	.
Sequence	A	A	E	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)