Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	R	D	Q	P	L	G	E	L	A	L	S	I	P	R	A	S	A	L	F	R	K	Y	D	M	D	Y	C	C	G	G	K	Q	T	L	A	R	A	A	A	R	K	E	L	D	V	E	V	I	E	A	E	L	A	K	L	A	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?																																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	P	I	E	K	D	W	R	S	A	P	L	A	E	I	I	D	H	I	I	V	R	Y	H	D	R	H	R	E	Q	L	P	E	L	I	L	Q	A	T	K	V	E	R	V	H	A	D	K	P	S	V	P	K	G	L	T	K	Y	L	T
Secondary structure
SS confidence
Disorder		?	?		?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	L	H	E	E	L	S	S	H	M	M	K	E	E	Q	I	L	F	P	M	I	K	Q	G	M	G	S	Q	A	M	G	P	I	S	V	M	E	S	E	H	D	E	A	G	E	L	L	E	V	I	K	H	T	T	N	N	V	T	P	P
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Sequence		P	E	A	C	T	T	W	K	A	M	Y	N	G	I	N	E	L	I	D	D	L	M	D	H	I	S	L	E	N	N	V	L	F	P	R	A	L	A	G	E
Secondary structure
SS confidence
Disorder		?																																					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2p0n chain A Region: 70 - 218 Aligned: 141 Modelled: 149 Confidence: 99.7% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein nmb1532; PDBTitle: nmb1532 protein from neisseria meningitidis, unknown function Phyre2 PDB 2k5e chain A Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 99.6% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 Phyre2 PDB 2k53 chain A Region: 2 - 61 Aligned: 59 Modelled: 60 Confidence: 99.5% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 Phyre2 PDB 3cax chain A Region: 78 - 218 Aligned: 137 Modelled: 141 Confidence: 98.5% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf0695; PDBTitle: crystal structure of uncharacterized protein pf0695 Phyre2 PDB 2fi0 chain A domain 1 Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 97.3% Identity: 14% Fold: SP0561-like Superfamily: SP0561-like Family: SP0561-like Phyre2 PDB 2awy chain B Region: 84 - 214 Aligned: 113 Modelled: 131 Confidence: 93.9% Identity: 14% PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh; PDBTitle: met-dcrh-hr Phyre2 PDB 2mhr chain A Region: 84 - 214 Aligned: 99 Modelled: 116 Confidence: 72.7% Identity: 17% Fold: Four-helical up-and-down bundle Superfamily: Hemerythrin-like Family: Hemerythrin-like Phyre2 PDB 2hmz chain A Region: 84 - 210 Aligned: 90 Modelled: 107 Confidence: 71.7% Identity: 16% Fold: Four-helical up-and-down bundle Superfamily: Hemerythrin-like Family: Hemerythrin-like Phyre2 PDB 2pt0 chain A domain 1 Region: 27 - 90 Aligned: 63 Modelled: 64 Confidence: 70.7% Identity: 16% Fold: (Phosphotyrosine protein) phosphatases II Superfamily: (Phosphotyrosine protein) phosphatases II Family: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA Phyre2 PDB 1i4y chain A Region: 84 - 210 Aligned: 90 Modelled: 107 Confidence: 67.2% Identity: 14% Fold: Four-helical up-and-down bundle Superfamily: Hemerythrin-like Family: Hemerythrin-like Phyre2 PDB 1hrb chain A Region: 84 - 209 Aligned: 89 Modelled: 106 Confidence: 57.7% Identity: 16% Fold: Four-helical up-and-down bundle Superfamily: Hemerythrin-like Family: Hemerythrin-like Phyre2 PDB 1qwg chain A Region: 17 - 81 Aligned: 62 Modelled: 65 Confidence: 50.4% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: (2r)-phospho-3-sulfolactate synthase ComA Family: (2r)-phospho-3-sulfolactate synthase ComA Phyre2 PDB 1r9j chain A domain 3 Region: 25 - 66 Aligned: 41 Modelled: 42 Confidence: 48.2% Identity: 15% Fold: TK C-terminal domain-like Superfamily: TK C-terminal domain-like Family: Transketolase C-terminal domain-like Phyre2 PDB 1ku7 chain A Region: 8 - 77 Aligned: 70 Modelled: 70 Confidence: 47.4% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 3o8n chain A Region: 17 - 42 Aligned: 26 Modelled: 26 Confidence: 39.7% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase, muscle type; PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle Phyre2 PDB 1d4c chain A domain 3 Region: 35 - 67 Aligned: 33 Modelled: 33 Confidence: 39.0% Identity: 6% Fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Phyre2 PDB 1u83 chain A Region: 17 - 81 Aligned: 62 Modelled: 63 Confidence: 38.5% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis Phyre2 PDB 1u83 chain A Region: 17 - 81 Aligned: 62 Modelled: 63 Confidence: 38.5% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: (2r)-phospho-3-sulfolactate synthase ComA Family: (2r)-phospho-3-sulfolactate synthase ComA Phyre2 PDB 2hig chain A Region: 17 - 42 Aligned: 26 Modelled: 26 Confidence: 38.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:6-phospho-1-fructokinase; PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei. Phyre2 PDB 1sm4 chain A domain 2 Region: 29 - 57 Aligned: 29 Modelled: 29 Confidence: 36.9% Identity: 34% Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain Family: Reductases Phyre2 1 c2p0nA_ 2 c2k5eA_ 3 c2k53A_ 4 c3caxA_ 5 d2fi0a1 6 c2awyB_ 7 d2mhra_ 8 d2hmza_ 9 d2pt0a1 10 d1i4ya_ 11 d1hrba_ 12 d1qwga_ 13 d1r9ja3 14 d1ku7a_ 15 c3o8nA_ 16 d1d4ca3 17 c1u83A_ 18 d1u83a_ 19 c2higA_ 20 d1sm4a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p0nA_ 99.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein nmb1532; PDBTitle: nmb1532 protein from neisseria meningitidis, unknown function 2 c2k5eA_ 99.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 3 c2k53A_ 99.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 4 c3caxA_ 98.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf0695; PDBTitle: crystal structure of uncharacterized protein pf0695 5 d2fi0a1 97.3 14 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 6 c2awyB_ 93.9 14 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh; PDBTitle: met-dcrh-hr 7 d2mhra_ 72.7 17 Fold:Four-helical up-and-down bundle Superfamily:Hemerythrin-like Family:Hemerythrin-like 8 d2hmza_ 71.7 16 Fold:Four-helical up-and-down bundle Superfamily:Hemerythrin-like Family:Hemerythrin-like 9 d2pt0a1 70.7 16 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA 10 d1i4ya_ 67.2 14 Fold:Four-helical up-and-down bundle Superfamily:Hemerythrin-like Family:Hemerythrin-like 11 d1hrba_ 57.7 16 Fold:Four-helical up-and-down bundle Superfamily:Hemerythrin-like Family:Hemerythrin-like 12 d1qwga_ 50.4 23 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 13 d1r9ja3 48.2 15 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 14 d1ku7a_ 47.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 15 c3o8nA_ 39.7 27 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase, muscle type; PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle 16 d1d4ca3 39.0 6 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 17 c1u83A_ 38.5 16 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 18 d1u83a_ 38.5 16 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 19 c2higA_ 38.0 15 PDB header:transferase Chain: A: PDB Molecule:6-phospho-1-fructokinase; PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei. 20 d1sm4a2 36.9 34 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 21 c2lfcA_ not modelled 35.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j 22 d2p5zx2 not modelled 35.0 15 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 23 d1y0pa3 not modelled 35.0 12 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 24 d4pfka_ not modelled 31.6 15 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 25 c3o8oB_ not modelled 30.5 23 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase subunit beta; PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae 26 c2p9jH_ not modelled 29.8 13 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus 27 d2djia2 not modelled 29.8 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 28 d2phcb1 not modelled 29.4 15 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 29 c3k2qA_ not modelled 29.3 27 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 30 c3o8oC_ not modelled 29.3 27 PDB header:transferase Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha; PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae 31 d1pfka_ not modelled 29.1 20 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 32 c1zxxA_ not modelled 28.7 19 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 33 c2kebA_ not modelled 28.6 10 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 34 c2l1lB_ not modelled 27.8 16 PDB header:nuclear protein Chain: B: PDB Molecule:exportin-1; PDBTitle: nmr solution structure of the phi0 pki nes peptide in complex with2 crm1-rangtp 35 c1fncA_ not modelled 25.4 34 PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states 36 c2p5zX_ not modelled 23.7 15 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:type vi secretion system component; PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5 37 c3opyH_ not modelled 23.0 29 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 38 c3n1uA_ not modelled 22.6 5 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 39 c3opyB_ not modelled 22.1 29 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 40 d1ffva1 not modelled 22.0 18 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 41 d1zxia1 not modelled 21.4 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 42 d1v97a1 not modelled 20.3 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 43 c3opyG_ not modelled 20.2 29 PDB header:transferase Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 44 d2f48a1 not modelled 20.2 19 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 45 d2al3a1 not modelled 19.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 46 c3g7pA_ not modelled 19.8 14 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 47 c3fiwB_ not modelled 19.7 20 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor 48 d2piaa3 not modelled 18.6 4 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 49 d1ozha2 not modelled 18.1 7 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 50 d3e9va1 not modelled 17.8 15 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 51 d2z15a1 not modelled 17.6 18 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 52 c3hl4B_ not modelled 17.3 8 PDB header:transferase Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a; PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline 53 c2rrdA_ not modelled 17.1 14 PDB header:dna binding protein Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein; PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm 54 c2pmzN_ not modelled 16.7 14 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 55 d1qo8a3 not modelled 16.4 12 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 56 c3nj2B_ not modelled 16.4 9 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 57 d1jt6a1 not modelled 16.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 58 d1d8ba_ not modelled 15.9 18 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 59 c2zp2B_ not modelled 15.6 23 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 60 d1n62a1 not modelled 15.5 18 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 61 d1wrua2 not modelled 14.9 26 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 62 d1f3ta2 not modelled 14.9 11 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 63 d1nd9a_ not modelled 14.7 20 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:N-terminal subdomain of bacterial translation initiation factor IF2 64 c3m8jA_ not modelled 14.5 7 PDB header:transcription Chain: A: PDB Molecule:focb protein; PDBTitle: crystal structure of e.coli focb at 1.4 a resolution 65 c2xvcA_ not modelled 14.4 13 PDB header:cell cycle Chain: A: PDB Molecule:escrt-iii; PDBTitle: molecular and structural basis of escrt-iii recruitment to2 membranes during archaeal cell division 66 d2p7vb1 not modelled 14.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 67 c3opyE_ not modelled 14.3 27 PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 68 c3b81A_ not modelled 14.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, acrr family; PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution 69 d1rm6c1 not modelled 14.0 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 70 c3he0A_ not modelled 13.6 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus. 71 c2wuiA_ not modelled 13.6 20 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa. 72 c2nvaH_ not modelled 13.6 6 PDB header:lyase Chain: H: PDB Molecule:arginine decarboxylase, a207r protein; PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine 73 c2qwwB_ not modelled 13.5 10 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 74 d1gaqb_ not modelled 13.4 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 75 d1pvda2 not modelled 13.3 18 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase Pyr module 76 d2i10a1 not modelled 13.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 77 c2b5oA_ not modelled 12.9 31 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase 78 c1pfuA_ not modelled 12.9 15 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from escherichia coli complexed2 with methionine phosphinate 79 c3ccyA_ not modelled 12.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822 80 d1gawa2 not modelled 12.7 28 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 81 d1losc_ not modelled 12.7 10 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 82 d2np5a1 not modelled 12.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 83 c3f6wE_ not modelled 12.5 13 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 84 c2qcoA_ not modelled 12.5 17 PDB header:transcription Chain: A: PDB Molecule:cmer; PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni 85 d2cg4a1 not modelled 12.4 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 86 d3cdda2 not modelled 12.4 14 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 87 d1oe8a1 not modelled 12.3 22 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 88 d1h3na3 not modelled 12.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 89 d2fd5a1 not modelled 12.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 90 c3bcgA_ not modelled 12.2 20 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator acrr; PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction 91 c2k29A_ not modelled 12.2 19 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 92 c2kwpA_ not modelled 12.2 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa 93 d2g7la1 not modelled 12.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 94 d1pb6a1 not modelled 12.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 95 c3nbmA_ not modelled 12.1 28 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 96 c1wygA_ not modelled 12.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 97 c2dg7A_ not modelled 12.0 23 PDB header:gene regulation Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2) 98 d4fxca_ not modelled 11.9 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 99 d2id3a1 not modelled 11.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0