Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	G	R	W	V	K	Y	L	L	M	G	T	V	V	A	M	L	A	A	C	S	S	K	P	T	D	R	G	Q	Q	Y	K	D	G	K	F	T	Q	P	F	S	L	V	N	Q	P	D	A	V	G	A	P	I	N	A	G	D	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	I	N	H	I	R	N	S	S	P	R	L	Y	G	N	Q	S	N	V	Y	N	A	V	Q	E	W	L	R	A	G	G	D	T	R	N	M	R	Q	F	G	I	D	A	W	Q	M	E	G	A	D	N	Y	G	N	V	Q	F	T	G
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?											?																				?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	Y	T	P	V	I	Q	A	R	H	T	R	Q	G	E	F	Q	Y	P	I	Y	R	M	P	P	K	R	G	R	L	P	S	R	A	E	I	Y	A	G	A	L	S	D	K	Y	I	L	A	Y	S	N	S	L	M	D	N	F	I	M	D
Secondary structure
SS confidence
Disorder											?	?																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Q	G	S	G	Y	I	D	F	G	D	G	S	P	L	N	F	F	S	Y	A	G	K	N	G	H	A	Y	R	S	I	G	K	V	L	I	D	R	G	E	V	K	K	E	D	M	S	M	Q	A	I	R	H	W	G	E	T	H	S	E
Secondary structure
SS confidence
Disorder																																										?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	E	V	R	E	L	L	E	Q	N	P	S	F	V	F	F	K	P	Q	S	F	A	P	V	K	G	A	S	A	V	P	L	V	G	R	A	S	V	A	S	D	R	S	I	I	P	P	G	T	T	L	L	A	E	V	P	L	L	D	N
Secondary structure
SS confidence
Disorder																						?	?	?	?																																?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	G	K	F	N	G	Q	Y	E	L	R	L	M	V	A	L	D	V	G	G	A	I	K	G	Q	H	F	D	I	Y	Q	G	I	G	P	E	A	G	H	R	A	G	W	Y	N	H	Y	G	R	V	W	V	L	K	T	A	P	G	A	G
Secondary structure
SS confidence
Disorder		?		?	?																																																						?	?	?
Disorder confidence
		.	.	.	.	.
Sequence		N	V	F	S	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2g5d chain A domain 1 Region: 22 - 364 Aligned: 329 Modelled: 343 Confidence: 100.0% Identity: 30% Fold: Double psi beta-barrel Superfamily: Barwin-like endoglucanases Family: MLTA-like Phyre2 PDB 2ae0 chain X domain 1 Region: 23 - 357 Aligned: 334 Modelled: 335 Confidence: 100.0% Identity: 99% Fold: Double psi beta-barrel Superfamily: Barwin-like endoglucanases Family: MLTA-like Phyre2 PDB 2pnw chain A domain 1 Region: 40 - 362 Aligned: 309 Modelled: 323 Confidence: 100.0% Identity: 31% Fold: Double psi beta-barrel Superfamily: Barwin-like endoglucanases Family: MLTA-like Phyre2 PDB 3czb chain A Region: 42 - 357 Aligned: 289 Modelled: 316 Confidence: 100.0% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transglycosylase; PDBTitle: crystal structure of putative transglycosylase from caulobacter2 crescentus Phyre2 PDB 2pi8 chain A domain 1 Region: 23 - 257 Aligned: 230 Modelled: 235 Confidence: 100.0% Identity: 96% Fold: Double psi beta-barrel Superfamily: Barwin-like endoglucanases Family: MLTA-like Phyre2 PDB 1vbk chain A Region: 189 - 272 Aligned: 72 Modelled: 84 Confidence: 39.5% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 Phyre2 PDB 2kvs chain A Region: 207 - 239 Aligned: 33 Modelled: 33 Confidence: 37.1% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215 Phyre2 PDB 2opk chain C Region: 169 - 198 Aligned: 30 Modelled: 29 Confidence: 29.9% Identity: 20% PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution Phyre2 PDB 2v0e chain A domain 1 Region: 227 - 240 Aligned: 14 Modelled: 14 Confidence: 27.5% Identity: 14% Fold: GYF/BRK domain-like Superfamily: BRK domain-like Family: BRK domain-like Phyre2 PDB 1usu chain A Region: 151 - 180 Aligned: 30 Modelled: 30 Confidence: 26.2% Identity: 17% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Hsp90 middle domain Phyre2 PDB 2ckc chain A domain 1 Region: 227 - 240 Aligned: 14 Modelled: 14 Confidence: 25.2% Identity: 14% Fold: GYF/BRK domain-like Superfamily: BRK domain-like Family: BRK domain-like Phyre2 PDB 2ckc chain A Region: 227 - 240 Aligned: 14 Modelled: 14 Confidence: 25.2% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction Phyre2 PDB 1hk7 chain A Region: 151 - 180 Aligned: 30 Modelled: 30 Confidence: 25.1% Identity: 10% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp82; PDBTitle: middle domain of hsp90 Phyre2 PDB 2cka chain A Region: 227 - 240 Aligned: 14 Modelled: 14 Confidence: 24.9% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction Phyre2 PDB 2cka chain A domain 1 Region: 227 - 240 Aligned: 14 Modelled: 14 Confidence: 24.9% Identity: 21% Fold: GYF/BRK domain-like Superfamily: BRK domain-like Family: BRK domain-like Phyre2 PDB 1uss chain A Region: 211 - 238 Aligned: 26 Modelled: 28 Confidence: 24.0% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Linker histone H1/H5 Phyre2 PDB 1dw0 chain A Region: 19 - 76 Aligned: 52 Modelled: 58 Confidence: 23.7% Identity: 21% Fold: Cytochrome c Superfamily: Cytochrome c Family: monodomain cytochrome c Phyre2 PDB 1y6z chain A Region: 151 - 180 Aligned: 30 Modelled: 30 Confidence: 21.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:heat shock protein, putative; PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417 Phyre2 PDB 2gq0 chain B Region: 151 - 180 Aligned: 30 Modelled: 30 Confidence: 21.7% Identity: 20% PDB header:chaperone, hydrolase Chain: B: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of the middle domain of htpg, the e. coli2 hsp90 Phyre2 PDB 2dd4 chain H Region: 209 - 233 Aligned: 25 Modelled: 25 Confidence: 21.5% Identity: 16% PDB header:hydrolase Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit; PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus2 recombinant apo-enzyme Phyre2 1 d2g5da1 2 d2ae0x1 3 d2pnwa1 4 c3czbA_ 5 d2pi8a1 6 c1vbkA_ 7 c2kvsA_ 8 c2opkC_ 9 d2v0ea1 10 d1usua_ 11 d2ckca1 12 c2ckcA_ 13 c1hk7A_ 14 c2ckaA_ 15 d2ckaa1 16 d1ussa_ 17 d1dw0a_ 18 c1y6zA_ 19 c2gq0B_ 20 c2dd4H_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2g5da1 100.0 30 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 2 d2ae0x1 100.0 99 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 3 d2pnwa1 100.0 31 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 4 c3czbA_ 100.0 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transglycosylase; PDBTitle: crystal structure of putative transglycosylase from caulobacter2 crescentus 5 d2pi8a1 100.0 96 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 6 c1vbkA_ 39.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 7 c2kvsA_ 37.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215 8 c2opkC_ 29.9 20 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 9 d2v0ea1 27.5 14 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 10 d1usua_ 26.2 17 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Hsp90 middle domain 11 d2ckca1 25.2 14 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 12 c2ckcA_ 25.2 14 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 13 c1hk7A_ 25.1 10 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp82; PDBTitle: middle domain of hsp90 14 c2ckaA_ 24.9 21 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 15 d2ckaa1 24.9 21 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 16 d1ussa_ 24.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 17 d1dw0a_ 23.7 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 18 c1y6zA_ 21.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:heat shock protein, putative; PDBTitle: middle domain of plasmodium falciparum putative heat shock protein2 pf14_0417 19 c2gq0B_ 21.7 20 PDB header:chaperone, hydrolase Chain: B: PDB Molecule:chaperone protein htpg; PDBTitle: crystal structure of the middle domain of htpg, the e. coli2 hsp90 20 c2dd4H_ 21.5 16 PDB header:hydrolase Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit; PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus2 recombinant apo-enzyme 21 d1ef5a_ not modelled 21.4 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 22 d2ga1a1 not modelled 21.3 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Alr1493-like 23 c3mayE_ not modelled 21.0 12 PDB header:heme-binding protein Chain: E: PDB Molecule:possible exported protein; PDBTitle: crystal structure of a secreted mycobacterium tuberculosis heme-2 binding protein 24 c3pryA_ not modelled 19.3 13 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-beta; PDBTitle: crystal structure of the middle domain of human hsp90-beta refined at2 2.3 a resolution 25 c3g6iA_ not modelled 19.0 10 PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution 26 c2jroA_ not modelled 18.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75 27 c1wnfA_ not modelled 18.2 28 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 28 d1yqaa1 not modelled 18.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 29 c2h9aA_ not modelled 17.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 30 d2ocda1 not modelled 17.1 26 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 31 c3qmlC_ not modelled 17.0 15 PDB header:chaperone/protein transport Chain: C: PDB Molecule:nucleotide exchange factor sil1; PDBTitle: the structural analysis of sil1-bip complex reveals the mechanism for2 sil1 to function as a novel nucleotide exchange factor 32 d1zvfa1 not modelled 15.9 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 33 d2dl6a1 not modelled 15.8 30 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 34 d2e9xd2 not modelled 15.7 50 Fold:GINS/PriA/YqbF domain Superfamily:PriA/YqbF domain Family:SLD5 C-terminal domain-like 35 c2yxlA_ not modelled 15.3 16 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 36 c1zq1B_ not modelled 15.2 33 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 37 d1ei5a2 not modelled 15.1 20 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 38 c3l6gA_ not modelled 15.1 28 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 39 d1v29b_ not modelled 15.0 16 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 40 d2cnaa_ not modelled 14.9 29 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 41 d1h8ca_ not modelled 14.9 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 42 c2o1wB_ not modelled 14.7 27 PDB header:chaperone Chain: B: PDB Molecule:endoplasmin; PDBTitle: structure of n-terminal plus middle domains (n+m) of grp94 43 c2rqpA_ not modelled 14.6 19 PDB header:gene regulation Chain: A: PDB Molecule:heterochromatin protein 1-binding protein 3; PDBTitle: the solution structure of heterochromatin protein 1-binding2 protein 74 histone h1 like domain 44 c3pvpA_ not modelled 14.1 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 45 d2b9ea1 not modelled 13.9 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 46 c3h4wA_ not modelled 13.3 25 PDB header:hydrolase Chain: A: PDB Molecule:phosphatidylinositol-specific phospholipase c1; PDBTitle: structure of a ca+2 dependent phosphatidylinositol-specific2 phospholipase c (pi-plc) enzyme from streptomyces antibioticus 47 c1vzyA_ not modelled 13.2 22 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of the bacillus subtilis hsp33 48 d1hsta_ not modelled 12.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 49 d1vrba1 not modelled 12.7 22 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 50 c1f3mB_ not modelled 12.7 7 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: crystal structure of human serine/threonine kinase pak1 51 c1ynmA_ not modelled 12.4 18 PDB header:hydrolase Chain: A: PDB Molecule:r.hinp1i restriction endonuclease; PDBTitle: crystal structure of restriction endonuclease hinp1i 52 d2b3aa1 not modelled 12.4 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 53 c2dzkA_ not modelled 12.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubx domain-containing protein 2; PDBTitle: structure of the ubx domain in mouse ubx domain-containing2 protein 2 54 d1uhma_ not modelled 12.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 55 c3gasA_ not modelled 12.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:heme oxygenase; PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme 56 d1yfua1 not modelled 12.3 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 57 c2xdvA_ not modelled 12.1 17 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 58 c1y4sA_ not modelled 12.1 20 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein htpg; PDBTitle: conformation rearrangement of heat shock protein 90 upon2 adp binding 59 d1i42a_ not modelled 11.9 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 60 d2cr5a1 not modelled 11.9 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 61 c1x3lA_ not modelled 11.8 24 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 62 d2d28c1 not modelled 11.7 31 Fold:Alpha-lytic protease prodomain-like Superfamily:EspE N-terminal domain-like Family:GSPII protein E N-terminal domain-like 63 d1hw7a_ not modelled 11.7 20 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 64 c1hw7A_ not modelled 11.7 20 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp33; PDBTitle: hsp33, heat shock protein with redox-regulated chaperone activity 65 c3o7kA_ not modelled 11.6 15 PDB header:lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline2 decarboxylase from klebsiella pneumoniae 66 c3a52A_ not modelled 11.6 20 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 67 d1s3sg_ not modelled 11.3 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 68 d2b8na1 not modelled 11.2 14 Fold:GckA/TtuD-like Superfamily:GckA/TtuD-like Family:GckA/TtuD-like 69 c3al6A_ not modelled 11.2 28 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 70 d1usta_ not modelled 11.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 71 c2d6fA_ not modelled 10.8 26 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 72 d1vzya1 not modelled 10.7 17 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 73 d1ixka_ not modelled 10.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 74 c3bcwB_ not modelled 10.5 9 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 75 d1prya_ not modelled 10.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 76 d1bg6a1 not modelled 10.1 23 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:N-(1-D-carboxylethyl)-L-norvaline dehydrogenase 77 d1ugpb_ not modelled 9.8 10 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 78 d1gu2a_ not modelled 9.8 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 79 d2bxxa1 not modelled 9.7 41 Fold:Coronavirus RNA-binding domain Superfamily:Coronavirus RNA-binding domain Family:Coronavirus RNA-binding domain 80 d2v0fa1 not modelled 9.4 23 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 81 c3q6nF_ not modelled 9.3 10 PDB header:chaperone Chain: F: PDB Molecule:heat shock protein hsp 90-alpha; PDBTitle: crystal structure of human mc-hsp90 in p21 space group 82 d1o5ua_ not modelled 9.1 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 83 c2c5sA_ not modelled 9.0 13 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 84 d1wj4a_ not modelled 9.0 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 85 d2f9zc1 not modelled 8.8 23 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 86 c1a79B_ not modelled 8.7 25 PDB header:endonuclease Chain: B: PDB Molecule:trna endonuclease; PDBTitle: crystal structure of the trna splicing endonuclease from2 methanococcus jannaschii 87 d1lfda_ not modelled 8.6 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 88 d2qdyb1 not modelled 8.4 6 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 89 c2kxjA_ not modelled 8.3 17 PDB header:protein binding Chain: A: PDB Molecule:ubx domain-containing protein 4; PDBTitle: solution structure of ubx domain of human ubxd2 protein 90 d1vq0a1 not modelled 8.1 21 Fold:Hsp33 domain Superfamily:Hsp33 domain Family:Hsp33 domain 91 c3d6zA_ not modelled 7.9 8 PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine 92 d1vl7a_ not modelled 7.6 20 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 93 c2kngA_ not modelled 7.5 29 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 94 c1vq0A_ not modelled 7.4 23 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution 95 d2d6fa2 not modelled 7.3 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 96 c3hefB_ not modelled 7.2 17 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 97 c3kh0A_ not modelled 7.2 33 PDB header:signaling protein Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator; PDBTitle: crystal structure of the ras-association (ra) domain of2 ralgds 98 d1xhna1 not modelled 7.1 24 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 99 d1h2ka_ not modelled 7.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0