PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qmlC_

Fold library id	PDB Header	Molecule	Title
c3qmlC_	PDB header: chaperone/protein transport	Chain: C: PDB Molecule: nucleotide exchange factor sil1;	PDBTitle: the structural analysis of sil1-bip complex reveals the mechanism for2 sil1 to function as a novel nucleotide exchange factor

Links to external resources
Added to library: Mon Jul 4 03:53:02 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G D Y E F S S D F K E M R N I I D S N P T L S S Q D I A R L E D S F D R I M E F A H D Y K H G Y K I I T H E F A L L A N L S L N E N L P L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G T T S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L R E L S T R V I T S C L R N N P P V V E F I N E S F P N F K S K I M A A L S N L N D S R S S N I L I K R Y L S I L N E L P V T S E D L Y S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T V V L Q N V Y E R N N K D K Q L Q I K V L E L I S K I L K A D M Y E L Q E W A N E F Q E M V Q N K S I D E L H T R T F F D T L Y N L K K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
T
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . .

Sequence F K S D I T I N K G F L N W L A Q Q C K A R Q S N L D N G L Q E R D T E Q D S F D K K L I D S R H L I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
T S
S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	D	Y	E	F	S	S	D	F	K	E	M	R	N	I	I	D	S	N	P	T	L	S	S	Q	D	I	A	R	L	E	D	S	F	D	R	I	M	E	F	A	H	D	Y	K	H	G	Y	K	I	I	T	H	E	F	A	L	L	A	N	L	S	L	N	E	N	L	P	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T															S	S																	G	G	G	T	T	S																						T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	R	E	L	S	T	R	V	I	T	S	C	L	R	N	N	P	P	V	V	E	F	I	N	E	S	F	P	N	F	K	S	K	I	M	A	A	L	S	N	L	N	D	S	R	S	S	N	I	L	I	K	R	Y	L	S	I	L	N	E	L	P	V	T	S	E	D	L	Y	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T													T	T																																S				S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	V	V	L	Q	N	V	Y	E	R	N	N	K	D	K	Q	L	Q	I	K	V	L	E	L	I	S	K	I	L	K	A	D	M	Y	E	L	Q	E	W	A	N	E	F	Q	E	M	V	Q	N	K	S	I	D	E	L	H	T	R	T	F	F	D	T	L	Y	N	L	K	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T																				T	T														T		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Sequence	F	K	S	D	I	T	I	N	K	G	F	L	N	W	L	A	Q	Q	C	K	A	R	Q	S	N	L	D	N	G	L	Q	E	R	D	T	E	Q	D	S	F	D	K	K	L	I	D	S	R	H	L	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S																						T	S			S																		T	T	T