PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3g6iA_

Fold library id	PDB Header	Molecule	Title
c3g6iA_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: putative outer membrane protein, part of	PDBTitle: crystal structure of outer membrane protein, part of2 carbohydrate binding complex (np_809935.1) from3 bacteroides thetaiotaomicron vpi-5482 at 1.93 a resolution

Links to external resources
Added to library: Tue Mar 16 13:01:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V D L N K E N R D P K Y V E S I V N R S Q K I V D K L G L T D A K V A E D V C N V I A N R Y F E L N D I Y E I R D A K V K A V K E S G L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G D A K N E A L K A A E N E K D A A L Y R S H F A F P A S L S L F L N E E Q I E A V K D G X T Y G V V K V T Y E A T L D X I P S L K E E E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence V Q I Y A W L V E A R E F A X D A E N S N K K H A A F G K Y K G R I N N Y L A K R G Y N L T K E R E E W A K R V K A R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	D	L	N	K	E	N	R	D	P	K	Y	V	E	S	I	V	N	R	S	Q	K	I	V	D	K	L	G	L	T	D	A	K	V	A	E	D	V	C	N	V	I	A	N	R	Y	F	E	L	N	D	I	Y	E	I	R	D	A	K	V	K	A	V	K	E	S	G	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S																				T		S																																				S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	D	A	K	N	E	A	L	K	A	A	E	N	E	K	D	A	A	L	Y	R	S	H	F	A	F	P	A	S	L	S	L	F	L	N	E	E	Q	I	E	A	V	K	D	G	X	T	Y	G	V	V	K	V	T	Y	E	A	T	L	D	X	I	P	S	L	K	E	E	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																							T							T	T	T														T	T	T														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	V	Q	I	Y	A	W	L	V	E	A	R	E	F	A	X	D	A	E	N	S	N	K	K	H	A	A	F	G	K	Y	K	G	R	I	N	N	Y	L	A	K	R	G	Y	N	L	T	K	E	R	E	E	W	A	K	R	V	K	A	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S	S	S																						T	T