Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	L	L	P	C	T	A	L	V	M	C	A	G	M	A	C	A	Q	A	E	E	R	N	D	W	H	F	N	I	G	A	M	Y	E	I	E	N	V	E	G	Y	G	E	D	M	D	G	L	A	E	P	S	V	Y	F	N	A	A
Secondary structure
SS confidence
Disorder		?	?	?	?									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	P	W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V
Secondary structure
SS confidence
Disorder											?		?	?	?	?	?	?	?	?	?	?	?	?	?		?																	?	?	?													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?																																		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	F	N	E	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N
Secondary structure
SS confidence
Disorder																?			?	?	?	?	?	?	?	?	?	?	?	?																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		W	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?																														?	?		?	?	?	?	?								?				?
Disorder confidence
		.
Sequence		F
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2iwv chain D Region: 25 - 301 Aligned: 277 Modelled: 277 Confidence: 100.0% Identity: 100% PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Phyre2 PDB 1uyn chain X Region: 59 - 301 Aligned: 232 Modelled: 243 Confidence: 98.5% Identity: 18% Fold: Transmembrane beta-barrels Superfamily: Autotransporter Family: Autotransporter Phyre2 PDB 3dwo chain X Region: 90 - 301 Aligned: 211 Modelled: 212 Confidence: 98.4% Identity: 12% PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Phyre2 PDB 2wjq chain A Region: 31 - 222 Aligned: 171 Modelled: 192 Confidence: 98.3% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Phyre2 PDB 1g90 chain A Region: 150 - 301 Aligned: 152 Modelled: 152 Confidence: 98.2% Identity: 18% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 3aeh chain B Region: 80 - 301 Aligned: 208 Modelled: 222 Confidence: 98.2% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp Phyre2 PDB 3slj chain A Region: 80 - 301 Aligned: 215 Modelled: 222 Confidence: 98.2% Identity: 13% PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant Phyre2 PDB 1p4t chain A Region: 150 - 301 Aligned: 147 Modelled: 152 Confidence: 98.1% Identity: 13% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 1qjp chain A Region: 150 - 301 Aligned: 129 Modelled: 145 Confidence: 98.0% Identity: 19% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2k0l chain A Region: 160 - 301 Aligned: 142 Modelled: 142 Confidence: 98.0% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 2qom chain B Region: 61 - 301 Aligned: 231 Modelled: 237 Confidence: 97.7% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. Phyre2 PDB 2f1t chain B Region: 169 - 301 Aligned: 133 Modelled: 133 Confidence: 97.6% Identity: 8% PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Phyre2 PDB 1t16 chain A Region: 53 - 301 Aligned: 248 Modelled: 249 Confidence: 97.6% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Outer membrane protein transport protein Phyre2 PDB 3nb3 chain C Region: 176 - 301 Aligned: 107 Modelled: 126 Confidence: 97.5% Identity: 21% PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Phyre2 PDB 2jmm chain A Region: 150 - 301 Aligned: 140 Modelled: 152 Confidence: 97.5% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Phyre2 PDB 3qq2 chain C Region: 59 - 301 Aligned: 223 Modelled: 243 Confidence: 97.4% Identity: 14% PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Phyre2 PDB 3kvn chain A Region: 62 - 301 Aligned: 232 Modelled: 240 Confidence: 97.2% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa Phyre2 PDB 3qra chain A Region: 154 - 301 Aligned: 142 Modelled: 148 Confidence: 97.2% Identity: 15% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 3bry chain B Region: 28 - 301 Aligned: 238 Modelled: 247 Confidence: 96.9% Identity: 15% PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Phyre2 PDB 2lhf chain A Region: 149 - 301 Aligned: 153 Modelled: 153 Confidence: 96.6% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles Phyre2 PDB 1ml8 chain A Region: 5 - 38 Aligned: 33 Modelled: 33 Confidence: 66.6% Identity: 6% Fold: OsmC-like Superfamily: OsmC-like Family: YhfA-like Phyre2 1 c2iwvD_ 2 d1uynx_ 3 c3dwoX_ 4 c2wjqA_ 5 d1g90a_ 6 c3aehB_ 7 c3sljA_ 8 d1p4ta_ 9 d1qjpa_ 10 c2k0lA_ 11 c2qomB_ 12 c2f1tB_ 13 d1t16a_ 14 c3nb3C_ 15 c2jmmA_ 16 c3qq2C_ 17 c3kvnA_ 18 c3qraA_ 19 c3bryB_ 20 c2lhfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 d1ml8a_ 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2iwvD_ 100.0 100 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 2 d1uynx_ 98.5 18 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 3 c3dwoX_ 98.4 12 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 4 c2wjqA_ 98.3 15 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 5 d1g90a_ 98.2 18 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 6 c3aehB_ 98.2 12 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 7 c3sljA_ 98.2 13 PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant 8 d1p4ta_ 98.1 13 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 9 d1qjpa_ 98.0 19 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 10 c2k0lA_ 98.0 17 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 11 c2qomB_ 97.7 10 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 12 c2f1tB_ 97.6 8 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 13 d1t16a_ 97.6 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 14 c3nb3C_ 97.5 21 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 15 c2jmmA_ 97.5 16 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 16 c3qq2C_ 97.4 14 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 17 c3kvnA_ 97.2 15 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 18 c3qraA_ 97.2 15 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 19 c3bryB_ 96.9 15 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 20 c2lhfA_ 96.6 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 21 c3brzA_ not modelled 96.6 15 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 22 c2x4mD_ not modelled 96.2 18 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 23 c2x27X_ not modelled 95.7 12 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 24 c3dzmB_ not modelled 94.9 19 PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 25 d1qj8a_ not modelled 94.8 10 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 26 c3a2rX_ not modelled 94.7 15 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 27 d2fgqx1 not modelled 92.9 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 28 d1phoa_ not modelled 92.2 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 29 d2vdfa1 not modelled 92.1 20 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane adhesin/invasin OpcA 30 d2zfga1 not modelled 91.5 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 31 c3nsgA_ not modelled 88.5 14 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 32 d3prna_ not modelled 87.3 16 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 33 d1osma_ not modelled 85.6 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 34 c2hdiA_ not modelled 84.7 15 PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. 35 d1i78a_ not modelled 80.2 14 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 36 d1ml8a_ 66.6 6 Fold:OsmC-like Superfamily:OsmC-like Family:YhfA-like 37 d2pora_ not modelled 65.0 17 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 38 c1fw3A_ not modelled 60.4 15 PDB header:hydrolase, membrane protein Chain: A: PDB Molecule:outer membrane phospholipase a; PDBTitle: outer membrane phospholipase a from escherichia coli 39 d1nyed_ not modelled 49.3 18 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 40 c2ql8A_ not modelled 46.2 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative redox protein; PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution 41 c2grxB_ not modelled 41.2 13 PDB header:metal transport Chain: B: PDB Molecule:ferrichrome-iron receptor; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 42 d1vlaa_ not modelled 38.9 19 Fold:OsmC-like Superfamily:OsmC-like Family:YhfA-like 43 c1qd6C_ not modelled 38.6 13 PDB header:membrane protein Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla)); PDBTitle: outer membrane phospholipase a from escherichia coli 44 d1af6a_ not modelled 36.2 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 45 c3qlbA_ not modelled 34.7 11 PDB header:metal transport Chain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin 46 c2iahA_ not modelled 34.4 13 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 47 d2pn2a1 not modelled 34.3 18 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 48 d1uspa_ not modelled 34.1 12 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 49 d1a0tp_ not modelled 32.0 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 50 c3eerA_ not modelled 31.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:organic hydroperoxide resistance protein, putative; PDBTitle: high resolution structure of putative organic hydroperoxide resistance2 protein from vibrio cholerae o1 biovar eltor str. n16961 51 c2egtA_ not modelled 30.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein aq_1549; PDBTitle: crystal structure of hypothetical protein (aq1549) from aquifex2 aeolicus 52 c2o4vA_ not modelled 28.9 10 PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane 53 c2bjoA_ not modelled 28.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:organic hydroperoxide resistance protein ohrb; PDBTitle: crystal structure of the organic hydroperoxide resistance2 protein ohrb of bacillus subtilis 54 d2d7va1 not modelled 27.7 12 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 55 c1xkhC_ not modelled 27.7 12 PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine 56 c1xkwA_ not modelled 27.6 12 PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa 57 d1by5a_ not modelled 24.4 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 58 c1lqlE_ not modelled 23.6 6 PDB header:unknown function Chain: E: PDB Molecule:osmotical inducible protein c like family; PDBTitle: crystal structure of osmc like protein from mycoplasma2 pneumoniae 59 d1lqla_ not modelled 23.6 6 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 60 d2opla1 not modelled 23.1 15 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 61 d2onfa1 not modelled 17.9 18 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 62 d1n2fa_ not modelled 17.1 12 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 63 d1tlya_ not modelled 17.0 15 Fold:Transmembrane beta-barrels Superfamily:Tsx-like channel Family:Tsx-like channel 64 c3gpiA_ not modelled 13.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 65 d1qwia_ not modelled 13.6 16 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 66 c3cjeA_ not modelled 12.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:osmc-like protein; PDBTitle: crystal structure of an osmc-like hydroperoxide resistance protein2 (jann_2040) from jannaschia sp. ccs1 at 1.70 a resolution 67 c3dhnA_ not modelled 12.4 16 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 68 c3k6gA_ not modelled 11.5 20 PDB header:protein binding Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1; PDBTitle: crystal structure of rap1 and trf2 complex 69 c3efmA_ not modelled 10.6 13 PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis 70 c2ervA_ not modelled 9.8 11 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl 71 d2c7pa1 not modelled 8.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:C5 cytosine-specific DNA methylase, DCM 72 c2q5xA_ not modelled 8.6 10 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of the c-terminal domain of hnup98 73 d1i5pa1 not modelled 7.9 23 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 74 c2konA_ not modelled 6.7 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of cv_2116 from chromobacterium2 violaceum. northeast structural genomics consortium target3 cvt4(1-82) 75 c2k4tA_ not modelled 6.4 15 PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles 76 d1prtc2 not modelled 6.1 20 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Aerolysin/Pertussis toxin (APT) domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0