Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	V	K	I	T	G	L	D	K	M	Q	K	Q	L	K	E	V	E	R	A	T	E	A	L	N	G	S	Y	D	V	R	F	D	A	N	D	P	S	S	I	E	N	A	I	Q	E	A	Y	S	M	V	D	E	R	A	S	G	Y	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Sequence		T	N	P	M	V	S	P	L	I	E	H	M	K	E	N	L	R	Q	Q	I	L	D	S	A	E	Q	Q	R	Q	E	S	G	Q	D	G	D
Secondary structure
SS confidence
Disorder																																?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mxn chain A Region: 10 - 38 Aligned: 29 Modelled: 29 Confidence: 62.6% Identity: 17% PDB header:replication Chain: A: PDB Molecule:recq-mediated genome instability protein 1; PDBTitle: crystal structure of the rmi core complex Phyre2 PDB 2ke4 chain A Region: 8 - 53 Aligned: 46 Modelled: 46 Confidence: 52.2% Identity: 26% PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 Phyre2 PDB 2ca5 chain A domain 1 Region: 6 - 43 Aligned: 29 Modelled: 38 Confidence: 48.9% Identity: 14% Fold: Long alpha-hairpin Superfamily: MxiH-like Family: MxiH-like Phyre2 PDB 3dxs chain X Region: 3 - 48 Aligned: 45 Modelled: 45 Confidence: 44.9% Identity: 36% PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase Phyre2 PDB 1is1 chain A Region: 33 - 89 Aligned: 57 Modelled: 57 Confidence: 43.9% Identity: 23% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1ge9 chain A Region: 27 - 89 Aligned: 62 Modelled: 63 Confidence: 39.4% Identity: 19% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1bco chain A domain 1 Region: 21 - 37 Aligned: 17 Modelled: 17 Confidence: 35.3% Identity: 29% Fold: mu transposase, C-terminal domain Superfamily: mu transposase, C-terminal domain Family: mu transposase, C-terminal domain Phyre2 PDB 3kwm chain C Region: 26 - 45 Aligned: 20 Modelled: 20 Confidence: 34.7% Identity: 30% PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a Phyre2 PDB 1osd chain A Region: 26 - 50 Aligned: 25 Modelled: 25 Confidence: 33.7% Identity: 20% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1eh1 chain A Region: 27 - 89 Aligned: 63 Modelled: 63 Confidence: 33.4% Identity: 22% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1dd5 chain A Region: 33 - 89 Aligned: 57 Modelled: 57 Confidence: 32.7% Identity: 16% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1m0s chain A domain 2 Region: 26 - 45 Aligned: 20 Modelled: 20 Confidence: 32.5% Identity: 35% Fold: Ferredoxin-like Superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain Family: D-ribose-5-phosphate isomerase (RpiA), lid domain Phyre2 PDB 2aw0 chain A Region: 26 - 50 Aligned: 25 Modelled: 25 Confidence: 32.4% Identity: 24% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2pjm chain A Region: 26 - 45 Aligned: 20 Modelled: 20 Confidence: 32.0% Identity: 35% PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii Phyre2 PDB 1yjr chain A Region: 26 - 50 Aligned: 25 Modelled: 25 Confidence: 30.4% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein Phyre2 PDB 1ek8 chain A Region: 33 - 89 Aligned: 57 Modelled: 57 Confidence: 29.9% Identity: 25% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1wqg chain A domain 1 Region: 33 - 89 Aligned: 57 Modelled: 57 Confidence: 28.8% Identity: 25% Fold: RRF/tRNA synthetase additional domain-like Superfamily: Ribosome recycling factor, RRF Family: Ribosome recycling factor, RRF Phyre2 PDB 1nu5 chain A Region: 2 - 74 Aligned: 72 Modelled: 73 Confidence: 28.8% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:chloromuconate cycloisomerase; PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme Phyre2 PDB 1nhl chain A Region: 7 - 25 Aligned: 19 Modelled: 19 Confidence: 28.2% Identity: 37% PDB header:protein transport Chain: A: PDB Molecule:synaptosomal-associated protein 23; PDBTitle: snap-23n structure Phyre2 PDB 2rog chain A Region: 16 - 50 Aligned: 34 Modelled: 35 Confidence: 27.4% Identity: 26% PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells Phyre2 1 c3mxnA_ 2 c2ke4A_ 3 d2ca5a1 4 c3dxsX_ 5 d1is1a_ 6 d1ge9a_ 7 d1bcoa1 8 c3kwmC_ 9 d1osda_ 10 d1eh1a_ 11 d1dd5a_ 12 d1m0sa2 13 d2aw0a_ 14 c2pjmA_ 15 c1yjrA_ 16 d1ek8a_ 17 d1wqga1 18 c1nu5A_ 19 c1nhlA_ 20 c2rogA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mxnA_ 62.6 17 PDB header:replication Chain: A: PDB Molecule:recq-mediated genome instability protein 1; PDBTitle: crystal structure of the rmi core complex 2 c2ke4A_ 52.2 26 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 3 d2ca5a1 48.9 14 Fold:Long alpha-hairpin Superfamily:MxiH-like Family:MxiH-like 4 c3dxsX_ 44.9 36 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 5 d1is1a_ 43.9 23 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 6 d1ge9a_ 39.4 19 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 7 d1bcoa1 35.3 29 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 8 c3kwmC_ 34.7 30 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 9 d1osda_ 33.7 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 10 d1eh1a_ 33.4 22 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 11 d1dd5a_ 32.7 16 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 12 d1m0sa2 32.5 35 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 13 d2aw0a_ 32.4 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 c2pjmA_ 32.0 35 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 15 c1yjrA_ 30.4 16 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 16 d1ek8a_ 29.9 25 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 17 d1wqga1 28.8 25 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 18 c1nu5A_ 28.8 14 PDB header:isomerase Chain: A: PDB Molecule:chloromuconate cycloisomerase; PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme 19 c1nhlA_ 28.2 37 PDB header:protein transport Chain: A: PDB Molecule:synaptosomal-associated protein 23; PDBTitle: snap-23n structure 20 c2rogA_ 27.4 26 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 21 d1uj4a2 not modelled 26.7 35 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 22 d1spia_ not modelled 26.0 50 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 23 c3l7oB_ not modelled 25.2 20 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 24 c3cqxD_ not modelled 25.1 19 PDB header:chaperone Chain: D: PDB Molecule:bag family molecular chaperone regulator 2; PDBTitle: chaperone complex 25 c3u7jA_ not modelled 24.8 45 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 26 c1lkzB_ not modelled 23.9 50 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 27 d1o8ba2 not modelled 23.6 50 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 28 c1m0sA_ not modelled 23.2 35 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 29 c2l3mA_ not modelled 22.3 20 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 30 d1ftaa_ not modelled 22.3 50 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 31 d1p6ta1 not modelled 22.2 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 32 d1q8la_ not modelled 22.1 8 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 33 d1mwza_ not modelled 22.0 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 c3tj4B_ not modelled 21.8 14 PDB header:lyase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg 35 c1xtzA_ not modelled 21.8 30 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 36 c2qv5A_ not modelled 21.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 37 c2ofhX_ not modelled 21.5 22 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 38 d1r6wa1 not modelled 21.5 26 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 39 c1uj6A_ not modelled 21.2 35 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 40 c2kt2A_ not modelled 19.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 41 c3czqA_ not modelled 19.9 23 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti 42 c1lk5C_ not modelled 19.5 35 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 43 c2kkhA_ not modelled 19.2 27 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 44 c2fhyL_ not modelled 18.5 50 PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor 45 c1svfC_ not modelled 18.3 35 PDB header:viral protein Chain: C: PDB Molecule:protein (fusion glycoprotein); PDBTitle: paramyxovirus sv5 fusion protein core 46 d1p6ta2 not modelled 18.0 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 47 c1y3kA_ not modelled 18.0 30 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 48 c2qgyA_ not modelled 17.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:enolase from the environmental genome shotgun PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea 49 c2gq1A_ not modelled 17.8 38 PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions 50 c2jvrA_ not modelled 17.7 33 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolar protein 3; PDBTitle: segmental isotope labeling of npl3p 51 d1nuwa_ not modelled 17.3 50 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 52 d1afia_ not modelled 17.0 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 53 c1bm4A_ not modelled 17.0 38 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 54 d1w55a2 not modelled 16.9 19 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 55 c2v6lI_ not modelled 16.8 14 PDB header:protein transport Chain: I: PDB Molecule:mxih; PDBTitle: molecular model of a type iii secretion system needle 56 d2fiqa1 not modelled 16.2 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 57 c3h2zA_ not modelled 16.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri 58 c2pmpA_ not modelled 16.1 31 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana 59 c3ugvE_ not modelled 15.9 15 PDB header:lyase Chain: E: PDB Molecule:enolase; PDBTitle: crystal structure of an enolase from alpha pretobacterium bal199 (efi2 target efi-501650) with bound mg 60 d1bk4a_ not modelled 15.4 50 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 61 d1lk5a2 not modelled 15.1 35 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 62 c2d7dB_ not modelled 14.8 23 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 63 c3ce2A_ not modelled 14.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative peptidase; PDBTitle: crystal structure of putative peptidase from chlamydophila abortus 64 d2qifa1 not modelled 14.2 36 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 65 c2qnfB_ not modelled 14.1 12 PDB header:hydrolase/dna Chain: B: PDB Molecule:recombination endonuclease vii; PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches 66 c2o012_ not modelled 14.0 55 PDB header:photosynthesis Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 67 c1yg0A_ not modelled 13.9 32 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 68 c2gcfA_ not modelled 13.7 23 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 69 c3hheA_ not modelled 13.6 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 70 c2jowA_ not modelled 12.9 27 PDB header:transport protein Chain: A: PDB Molecule:protein prgi; PDBTitle: differences in the electrostatic surfaces of the type iii2 secretion needle proteins 71 d1gx1a_ not modelled 12.8 18 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 72 c2ldiA_ not modelled 12.6 22 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 73 c2oz8B_ not modelled 11.6 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti 74 c2kyzA_ not modelled 11.6 14 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 75 d1wi6a1 not modelled 11.3 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 76 c3q45E_ not modelled 11.1 19 PDB header:isomerase Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family; PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val 77 c3g65A_ not modelled 10.9 20 PDB header:cell cycle Chain: A: PDB Molecule:cell cycle checkpoint control protein rad9a; PDBTitle: crystal structure of the human rad9-rad1-hus1 dna damage2 checkpoint complex 78 c3ohwB_ not modelled 10.8 44 PDB header:protein binding Chain: B: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide; PDBTitle: x-ray structure of phycobilisome lcm core-membrane linker polypeptide2 (fragment 721-860) from synechocystis sp. pcc 6803, northeast3 structural genomics consortium target sgr209e 79 c3kmlB_ not modelled 10.4 22 PDB header:viral protein Chain: B: PDB Molecule:coat protein; PDBTitle: circular permutant of the tobacco mosaic virus 80 d1rwta_ not modelled 10.4 21 Fold:Chlorophyll a-b binding protein Superfamily:Chlorophyll a-b binding protein Family:Chlorophyll a-b binding protein 81 c2f8mB_ not modelled 10.1 30 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 82 c2ky4A_ not modelled 9.9 29 PDB header:photosynthesis Chain: A: PDB Molecule:phycobilisome linker polypeptide; PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome2 linker polypeptide from anabaena sp. northeast structural genomics3 consortium target nsr123e 83 d1s6ua_ not modelled 9.8 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 84 d1brwa1 not modelled 9.6 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 85 c3l9vE_ not modelled 9.3 24 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 86 d1kvja_ not modelled 8.8 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 87 d1d9qa_ not modelled 8.8 53 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 88 c2bezC_ not modelled 8.8 22 PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein 89 c1ybxA_ not modelled 8.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 90 c2x5kO_ not modelled 8.7 16 PDB header:oxidoreductase Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase; PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli 91 c2osrA_ not modelled 8.3 35 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolar protein 3; PDBTitle: nmr structure of rrm-2 of yeast npl3 protein 92 d1jjcb6 not modelled 8.2 21 Fold:PheT/TilS domain Superfamily:PheT/TilS domain Family:B3/B4 domain of PheRS, PheT 93 d2phcb2 not modelled 8.1 16 Fold:DCoH-like Superfamily:PH0987 N-terminal domain-like Family:PH0987 N-terminal domain-like 94 c3uksB_ not modelled 7.9 40 PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii 95 d1hdgo2 not modelled 7.8 26 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 96 c3tr9A_ not modelled 7.8 37 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 97 d2tpta1 not modelled 7.7 7 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 98 d1e52a_ not modelled 7.6 20 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 99 d2ggpb1 not modelled 7.5 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0