Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75863
DateThu Jan 5 12:15:13 GMT 2012
Unique Job ID986b362cc329d8ca

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2exna1
Top template information
Fold:MOSC N-terminal domain-like
Superfamily:MOSC N-terminal domain-like
Family:MOSC N-terminal domain-like
Confidence and coverage
Confidence:100.0% Coverage: 33%
120 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
349 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS
Secondary structure 



























SS confidence 



























































Disorder  ??

























































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  PVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
Secondary structure 


















SS confidence 



























































Disorder 




















??????
































Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
Secondary structure 





























SS confidence 



























































Disorder 



??????????
?











































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  SAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
Secondary structure 






























SS confidence 



























































Disorder 




































??????
















Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAF
Secondary structure 

































SS confidence 



























































Disorder 










?












?
??
?????????????????












Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  RGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCV
Secondary structure 































SS confidence 



























































Disorder 









































????













Disorder confidence 



























































 
   .........
Sequence  PKTALKLAR
Secondary structure 


SS confidence 








Disorder 

?
?

??
Disorder confidence 








 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2exn chain A domain 1

3D model

Region: 4 - 129
Aligned: 120
Modelled: 126
Confidence: 100.0%
Identity: 13%
Fold: MOSC N-terminal domain-like
Superfamily: MOSC N-terminal domain-like
Family: MOSC N-terminal domain-like

Phyre2

PDB 2pia chain A

3D model

Region: 278 - 367
Aligned: 90
Modelled: 90
Confidence: 99.8%
Identity: 29%
PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]

Phyre2

PDB 2pia chain A domain 3

3D model

Region: 271 - 367
Aligned: 92
Modelled: 92
Confidence: 99.7%
Identity: 28%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin domains from multidomain proteins

Phyre2

PDB 1oru chain A

3D model

Region: 1 - 267
Aligned: 174
Modelled: 181
Confidence: 99.7%
Identity: 21%
Fold: PK beta-barrel domain-like
Superfamily: PK beta-barrel domain-like
Family: MOSC (MOCO sulphurase C-terminal) domain

Phyre2

PDB 1a70 chain A

3D model

Region: 287 - 368
Aligned: 82
Modelled: 82
Confidence: 99.7%
Identity: 33%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1fxi chain A

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 30%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1frr chain A

3D model

Region: 289 - 368
Aligned: 80
Modelled: 80
Confidence: 99.7%
Identity: 26%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1off chain A

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 28%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1iue chain A

3D model

Region: 289 - 368
Aligned: 80
Modelled: 80
Confidence: 99.7%
Identity: 33%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1pfd chain A

3D model

Region: 287 - 368
Aligned: 82
Modelled: 82
Confidence: 99.7%
Identity: 34%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1czp chain A

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 30%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1krh chain A

3D model

Region: 290 - 368
Aligned: 79
Modelled: 79
Confidence: 99.7%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase

Phyre2

PDB 1frd chain A

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 26%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1awd chain A

3D model

Region: 289 - 367
Aligned: 79
Modelled: 79
Confidence: 99.7%
Identity: 30%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1doi chain A

3D model

Region: 296 - 367
Aligned: 72
Modelled: 72
Confidence: 99.7%
Identity: 32%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1gaq chain B

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 33%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 4fxc chain A

3D model

Region: 287 - 367
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 26%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 2cjo chain A

3D model

Region: 287 - 368
Aligned: 82
Modelled: 82
Confidence: 99.6%
Identity: 34%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1wri chain A

3D model

Region: 288 - 368
Aligned: 80
Modelled: 81
Confidence: 99.6%
Identity: 24%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2

PDB 1e0z chain A

3D model

Region: 274 - 367
Aligned: 93
Modelled: 94
Confidence: 99.6%
Identity: 29%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
1

d2exna1
2

c2piaA_
3

d2piaa3
4

d1orua_
5

d1a70a_
6

d1fxia_
7

d1frra_
8

d1offa_
9

d1iuea_
10

d1pfda_
11

d1czpa_
12

c1krhA_
13

d1frda_
14

d1awda_
15

d1doia_
16

d1gaqb_
17

d4fxca_
18

d2cjoa_
19

d1wria_
20

d1e0za_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2exna1



100.0 13 Fold:MOSC N-terminal domain-like
Superfamily:MOSC N-terminal domain-like
Family:MOSC N-terminal domain-like
2c2piaA_



99.8 29 PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
3d2piaa3



99.7 28 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
4d1orua_



99.7 21 Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:MOSC (MOCO sulphurase C-terminal) domain
5d1a70a_



99.7 33 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
6d1fxia_



99.7 30 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
7d1frra_



99.7 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
8d1offa_



99.7 28 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
9d1iuea_



99.7 33 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
10d1pfda_



99.7 34 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
11d1czpa_



99.7 30 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
12c1krhA_



99.7 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase
13d1frda_



99.7 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
14d1awda_



99.7 30 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
15d1doia_



99.7 32 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
16d1gaqb_



99.7 33 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
17d4fxca_



99.7 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
18d2cjoa_



99.6 34 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
19d1wria_



99.6 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
20d1e0za_



99.6 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
21d1jq4a_



not modelled 99.6 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
22d1krha3



not modelled 99.6 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
23c3ah7A_



not modelled 99.2 16 PDB header:metal binding protein
Chain: A: PDB Molecule:[2fe-2s]ferredoxin;
PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
24d1i7ha_



not modelled 99.2 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
25d1l5pa_



not modelled 99.1 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
26c2wlbB_



not modelled 99.0 21 PDB header:electron transport
Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial;
PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria
27d1xlqa1



not modelled 98.9 16 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
28d1e9ma_



not modelled 98.8 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
29d1o65a_



not modelled 98.7 15 Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:MOSC (MOCO sulphurase C-terminal) domain
30d2bt6a1



not modelled 98.7 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
31c3huiA_



not modelled 98.7 18 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris
32c3lxfC_



not modelled 98.7 22 PDB header:metal binding protein
Chain: C: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
33d1b9ra_



not modelled 98.6 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
34d2fug33



not modelled 98.5 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
35d3c8ya2



not modelled 98.0 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
36c1l6vA_



not modelled 97.9 17 PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin 1;
PDBTitle: structure of reduced bovine adrenodoxin
37c1c4cA_



not modelled 97.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
38d1dgja2



not modelled 97.4 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
39d1t3qa2



not modelled 97.4 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
40d1vlba2



not modelled 97.4 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
41d1ffva2



not modelled 97.3 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
42d1n62a2



not modelled 97.3 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
43d1rm6c2



not modelled 97.2 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
44c1t3qD_



not modelled 97.2 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
45c2fugC_



not modelled 97.1 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
46c1rm6F_



not modelled 96.9 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
47c3hrdH_



not modelled 96.9 24 PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
48d1kf6b2



not modelled 96.8 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
49d2bs2b2



not modelled 96.8 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
50c1n60D_



not modelled 96.7 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
51c1ffuA_



not modelled 96.7 20 PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
52d1nekb2



not modelled 96.5 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
53c2h89B_



not modelled 96.4 37 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
54d1jroa2



not modelled 96.0 33 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
55c2b76N_



not modelled 95.9 27 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
56c2bs2E_



not modelled 95.9 27 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
57c1nekB_



not modelled 95.8 29 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
58c1vlbA_



not modelled 95.6 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
59c2w3rG_



not modelled 95.5 30 PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
60d1v97a2



not modelled 95.1 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
61c1dgjA_



not modelled 95.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
62c3eubJ_



not modelled 95.0 28 PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
63c3b9jI_



not modelled 94.9 29 PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
64c1ep3B_



not modelled 94.4 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
65d1ep3b2



not modelled 92.9 23 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
66c1wygA_



not modelled 92.2 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
67c1x31A_



not modelled 89.9 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
68c1y56A_



not modelled 86.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
69c3esgA_



not modelled 56.2 20 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of hutd from pseudomonas fluorescens sbw25
70d1ylla1



not modelled 44.6 26 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:PA5104-like
71c2k5hA_



not modelled 29.4 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a
72d1kk1a1



not modelled 27.8 58 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
73d1g7sa2



not modelled 27.0 12 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
74d1s0ua1



not modelled 26.8 53 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
75d2qn6a1



not modelled 26.2 24 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
76d2gy9q1



not modelled 25.5 26 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
77c3bbnQ_



not modelled 24.5 22 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
78d1i94q_



not modelled 22.6 35 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
79d2uubq1



not modelled 21.7 30 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
80c1s1hQ_



not modelled 20.7 22 PDB header:ribosome
Chain: Q: PDB Molecule:40s ribosomal protein s11;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
81d2c78a1



not modelled 17.7 57 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
82d2exda1



not modelled 16.2 24 Fold:OB-fold
Superfamily:NfeD domain-like
Family:NfeD domain-like
83c2zkqq_



not modelled 16.2 31 PDB header:ribosomal protein/rna
Chain: Q: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
84d2o3aa1



not modelled 15.8 25 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
85c2xznQ_



not modelled 15.3 13 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
86c2zkrt_



not modelled 15.2 50 PDB header:ribosomal protein/rna
Chain: T: PDB Molecule:rna expansion segment es39 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
87c3cxgA_



not modelled 14.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w
88d1xn7a_



not modelled 14.2 50 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein YhgG
89d1zunb1



not modelled 13.8 36 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
90d2nqra1



not modelled 13.7 29 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
91d1vfsa1



not modelled 13.5 27 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Alanine racemase C-terminal domain-like
Family:Alanine racemase
92d1qvpa_



not modelled 12.9 33 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
93d1f60a1



not modelled 12.8 36 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
94d2zjru1



not modelled 12.5 43 Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
95c1ssfA_



not modelled 12.4 17 PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
96d1efca1



not modelled 12.2 57 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
97c4a1cS_



not modelled 12.1 50 PDB header:ribosome
Chain: S: PDB Molecule:rpl26;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
98d1wt8a1



not modelled 12.1 50 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
99d1vqot1



not modelled 10.8 50 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:Ribosomal proteins L24p and L21e

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0