PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2zkrt_

Fold library id	PDB Header	Molecule	Title
c2zkrt_	PDB header: ribosomal protein/rna	Chain: T: PDB Molecule: rna expansion segment es39 part iii;	PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Links to external resources
Added to library: Tue Mar 16 13:03:49 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T S D R S K N R K R H F N A P S H I R R K I M S S L S K E L R Q K N V S M P I R K D D E V Q V V R G H Y K G Q Q I G K V V Q V Y R K K Y V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
G G G G B
B
T T
S S T T T T
S T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110

Sequence Y I E R V Q R E K A N G T T V H V G I H P S K V V I T R K L D K D R K K I L E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
B
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	S	D	R	S	K	N	R	K	R	H	F	N	A	P	S	H	I	R	R	K	I	M	S	S	L	S	K	E	L	R	Q	K	N	V	S	M	P	I	R	K	D	D	E	V	Q	V	V	R	G	H	Y	K	G	Q	Q	I	G	K	V	V	Q	V	Y	R	K	K	Y	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T							G	G	G	G	B														B			T	T							S	S	T	T	T	T			S								T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Sequence	Y	I	E	R	V	Q	R	E	K	A	N	G	T	T	V	H	V	G	I	H	P	S	K	V	V	I	T	R	K	L	D	K	D	R	K	K	I	L	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T						S	S								B		G	G	G