PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2xznQ_

Fold library id	PDB Header	Molecule	Title
c2xznQ_	PDB header: ribosome	Chain: Q: PDB Molecule: ribosomal protein s17 containing protein;	PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Links to external resources
Added to library: Sat Jan 22 08:44:43 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D T Q I Q R A Y Q K Q D G V F L N S K K L L A K K T S A G V R Y Y K N I G L G F K T P K E A I E G T Y V D K K C P F T S N L S I R G K I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S S S
S S
G G G G G G S
S S
S S
T
T T
S S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K G L V I S T K M N R T V I I R R D Y L H Y V R K Y N R Y E K R H R N I P V H I S P C F S V K E G D I L V A G Q C R P I S K T V R F N A L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T T
T T S
T T
S S S

. . . . . . . . . 150 . . . . . . .

Sequence V V P N E I I G S V R K Q F L L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	T	Q	I	Q	R	A	Y	Q	K	Q	D	G	V	F	L	N	S	K	K	L	L	A	K	K	T	S	A	G	V	R	Y	Y	K	N	I	G	L	G	F	K	T	P	K	E	A	I	E	G	T	Y	V	D	K	K	C	P	F	T	S	N	L	S	I	R	G	K	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T	S	S	S	S					S	S			G	G	G	G	G	G	S		S	S												S	S									T						T	T		S	S	S	S	S					S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	G	L	V	I	S	T	K	M	N	R	T	V	I	I	R	R	D	Y	L	H	Y	V	R	K	Y	N	R	Y	E	K	R	H	R	N	I	P	V	H	I	S	P	C	F	S	V	K	E	G	D	I	L	V	A	G	Q	C	R	P	I	S	K	T	V	R	F	N	A	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	T	T													T	T	T	T															T	T	S				T	T												S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Sequence	V	V	P	N	E	I	I	G	S	V	R	K	Q	F	L	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T	T