Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	M	I	Y	G	I	H	A	V	Q	A	L	L	E	R	A	P	E	R	F	Q	E	V	F	I	L	K	G	R	E	D	K	R	L	L	P	L	I	H	A	L	E	S	Q	G	V	V	I	Q	L	A	N	R	Q	Y	L	D	E
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	S	D	G	A	V	H	Q	G	I	I	A	R	V	K	P	G	R	Q	Y	Q	E	N	D	L	P	D	L	I	A	S	L	D	Q	P	F	L	L	I	L	D	G	V	T	D	P	H	N	L	G	A	C	L	R	S	A	D	A	A	G
Secondary structure
SS confidence
Disorder																		?	?	?	?	?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	H	A	V	I	V	P	K	D	R	S	A	Q	L	N	A	T	A	K	K	V	A	C	G	A	A	E	S	V	P	L	I	R	V	T	N	L	A	R	T	M	R	M	L	Q	E	E	N	I	W	I	V	G	T	A	G	E	A	D	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	L	Y	Q	S	K	M	T	G	R	L	A	L	V	M	G	A	E	G	E	G	M	R	R	L	T	R	E	H	C	D	E	L	I	S	I	P	M	A	G	S	V	S	S	L	N	V	S	V	A	T	G	I	C	L	F	E	A	V	R
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.
Sequence		Q	R	S
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ipa chain A Region: 4 - 242 Aligned: 227 Modelled: 227 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase Phyre2 PDB 3gyq chain B Region: 2 - 242 Aligned: 232 Modelled: 232 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex Phyre2 PDB 1x7p chain B Region: 4 - 242 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet Phyre2 PDB 2i6d chain A Region: 4 - 241 Aligned: 221 Modelled: 216 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. Phyre2 PDB 1gz0 chain A domain 1 Region: 78 - 243 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 96% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1gz0 chain G Region: 78 - 243 Aligned: 166 Modelled: 162 Confidence: 100.0% Identity: 96% PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb Phyre2 PDB 1v2x chain A Region: 74 - 242 Aligned: 167 Modelled: 169 Confidence: 100.0% Identity: 31% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1zjr chain A Region: 82 - 242 Aligned: 160 Modelled: 160 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme Phyre2 PDB 1ipa chain A domain 1 Region: 87 - 242 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 31% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 2ha8 chain A Region: 89 - 242 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 23% PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 Phyre2 PDB 1mxi chain A Region: 96 - 243 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 18% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 3onp chain A Region: 95 - 241 Aligned: 147 Modelled: 142 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides Phyre2 PDB 3ic6 chain A Region: 85 - 243 Aligned: 159 Modelled: 156 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae Phyre2 PDB 3e5y chain B Region: 96 - 243 Aligned: 133 Modelled: 134 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei Phyre2 PDB 3l8u chain A Region: 98 - 243 Aligned: 138 Modelled: 146 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 Phyre2 PDB 3kty chain A Region: 94 - 241 Aligned: 147 Modelled: 148 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i Phyre2 PDB 3ilk chain B Region: 94 - 241 Aligned: 142 Modelled: 146 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 Phyre2 PDB 3dcm chain X Region: 105 - 241 Aligned: 137 Modelled: 137 Confidence: 99.9% Identity: 17% PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine Phyre2 PDB 1gz0 chain A domain 2 Region: 2 - 76 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 99% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: RNA 2'-O ribose methyltransferase substrate binding domain Phyre2 PDB 1gz0 chain F domain 2 Region: 2 - 76 Aligned: 75 Modelled: 73 Confidence: 99.6% Identity: 99% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: RNA 2'-O ribose methyltransferase substrate binding domain Phyre2 1 c1ipaA_ 2 c3gyqB_ 3 c1x7pB_ 4 c2i6dA_ 5 d1gz0a1 6 c1gz0G_ 7 d1v2xa_ 8 c1zjrA_ 9 d1ipaa1 10 c2ha8A_ 11 d1mxia_ 12 c3onpA_ 13 c3ic6A_ 14 c3e5yB_ 15 c3l8uA_ 16 c3ktyA_ 17 c3ilkB_ 18 c3dcmX_ 19 d1gz0a2 20 d1gz0f2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ipaA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 2 c3gyqB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex 3 c1x7pB_ 100.0 27 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 4 c2i6dA_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. 5 d1gz0a1 100.0 96 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 6 c1gz0G_ 100.0 96 PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb 7 d1v2xa_ 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 8 c1zjrA_ 100.0 29 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 9 d1ipaa1 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 10 c2ha8A_ 100.0 23 PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 11 d1mxia_ 100.0 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 12 c3onpA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 13 c3ic6A_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 14 c3e5yB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 15 c3l8uA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 16 c3ktyA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 17 c3ilkB_ 100.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 18 c3dcmX_ 99.9 17 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 19 d1gz0a2 99.6 99 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 20 d1gz0f2 99.6 99 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 21 d1ipaa2 not modelled 98.9 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 22 c2yy8B_ not modelled 97.2 16 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 23 c4a1dG_ not modelled 96.6 11 PDB header:ribosome Chain: G: PDB Molecule:rpl30; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 24 d2o3aa1 not modelled 96.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 25 c2zkr6_ not modelled 96.5 11 PDB header:ribosomal protein/rna Chain: 6: PDB Molecule:60s ribosomal protein l30e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 26 d2bo1a1 not modelled 96.5 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 27 c3cpqB_ not modelled 96.4 6 PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) 28 d1t0kb_ not modelled 96.3 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 29 d1vhka2 not modelled 96.3 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 30 d1w41a1 not modelled 96.3 8 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 31 d1vqof1 not modelled 95.5 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 32 c3kw2A_ not modelled 95.4 13 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 33 c1vhkA_ not modelled 95.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 34 d1xbia1 not modelled 95.4 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 35 c3on1A_ not modelled 95.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2414 protein; PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c 36 d2fc3a1 not modelled 95.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 37 d1rlga_ not modelled 95.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 38 d2aifa1 not modelled 95.1 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 39 d2vgna3 not modelled 95.0 21 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 40 c3ai9X_ not modelled 94.8 12 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 41 d1jj2f_ not modelled 94.7 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 42 c2lbwA_ not modelled 94.7 13 PDB header:rna binding protein Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2; PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant 43 d2qi2a3 not modelled 94.6 12 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 44 c3o85A_ not modelled 94.5 18 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosomal protein l7ae; PDBTitle: giardia lamblia 15.5kd rna binding protein 45 d1x52a1 not modelled 94.3 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 46 d2ozba1 not modelled 94.3 12 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 47 d2czwa1 not modelled 94.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 48 c3agjD_ not modelled 93.9 16 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 49 d2qwva1 not modelled 93.7 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 50 c3agjB_ not modelled 93.6 16 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 51 c2qi2A_ not modelled 93.1 12 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 52 c3obwA_ not modelled 93.0 17 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 53 c2vgmA_ not modelled 93.0 19 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 54 c1vhyB_ not modelled 92.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 55 c3obyB_ not modelled 92.7 18 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 56 c2ktvA_ not modelled 92.4 11 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 57 d2alea1 not modelled 91.7 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 58 c3agkA_ not modelled 90.9 19 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: crystal structure of archaeal translation termination factor, arf1 59 c3mcaB_ not modelled 90.2 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 60 c2xznU_ not modelled 90.2 14 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l7ae containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 61 c3e20C_ not modelled 88.2 14 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 62 c3ir9A_ not modelled 88.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 63 d1dt9a2 not modelled 87.0 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 64 d2qmma1 not modelled 86.3 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 65 c2egwB_ not modelled 85.4 13 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 66 c1dt9A_ not modelled 82.3 12 PDB header:translation Chain: A: PDB Molecule:protein (eukaryotic peptide chain release factor PDBTitle: the crystal structure of human eukaryotic release factor2 erf1-mechanism of stop codon recognition and peptidyl-trna3 hydrolysis 67 c3cg6A_ not modelled 82.2 14 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 68 d1v6za2 not modelled 78.2 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 69 c2zkrf_ not modelled 78.0 16 PDB header:ribosomal protein/rna Chain: F: PDB Molecule:rna expansion segment es7 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 70 c1z85B_ not modelled 77.9 20 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 71 d1nxza2 not modelled 76.7 12 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 72 d1k3ra2 not modelled 68.2 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 73 c2cx8B_ not modelled 66.7 14 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 74 c4a1eF_ not modelled 64.7 13 PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 75 c2kg4A_ not modelled 64.7 15 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 76 c3ib6B_ not modelled 64.6 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from listeria2 monocytogenes serotype 4b 77 c3u5cM_ not modelled 63.9 17 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s12; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 78 c3iz5H_ not modelled 62.0 16 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 79 c3izcH_ not modelled 59.0 14 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein rpl8 (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 80 c1k3rA_ not modelled 54.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 81 d1cl1a_ not modelled 49.5 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 82 d1u7pa_ not modelled 48.9 16 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 83 d1a53a_ not modelled 41.3 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 84 c1t9hA_ not modelled 35.5 11 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 85 c1r0lD_ not modelled 34.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 86 d1jvna2 not modelled 34.3 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 87 c2y0fD_ not modelled 33.8 15 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 88 c1s1iG_ not modelled 33.6 16 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l8-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 89 c2gqnB_ not modelled 32.5 11 PDB header:lyase Chain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide 90 c2c3zA_ not modelled 31.2 17 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 91 c3a14B_ not modelled 30.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 92 c2cb1A_ not modelled 26.4 18 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 93 c2eghA_ not modelled 25.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 94 c3q4gA_ not modelled 22.6 17 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 95 c2kboA_ not modelled 20.0 12 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 96 c2x3yA_ not modelled 19.6 25 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 97 d3by5a1 not modelled 18.8 15 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 98 c3by5A_ not modelled 18.8 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 99 d1cs1a_ not modelled 18.3 8 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0