Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	A	K	Q	R	I	A	R	R	V	A	Q	E	L	R	D	G	D	I	V	N	L	G	I	G	L	P	T	M	V	A	N	Y	L	P	E	G	I	H	I	T	L	Q	S	E	N	G	F	L	G	L	G	P	V	T	T	A	H	P
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	L	V	N	A	G	G	Q	P	C	G	V	L	P	G	A	A	M	F	D	S	A	M	S	F	A	L	I	R	G	G	H	I	D	A	C	V	L	G	G	L	Q	V	D	E	E	A	N	L	A	N	W	V	V	P	G	K	M	V	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	M	G	G	A	M	D	L	V	T	G	S	R	K	V	I	I	A	M	E	H	C	A	K	D	G	S	A	K	I	L	R	R	C	T	M	P	L	T	A	Q	H	A	V	H	M	L	V	T	E	L	A	V	F	R	F	I	D	G	K
Secondary structure
SS confidence
Disorder																							?	?										?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Sequence		M	W	L	T	E	I	A	D	G	C	D	L	A	T	V	R	A	K	T	E	A	R	F	E	V	A	A	D	L	N	T	Q	R	G	D	L
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ooy chain A domain 1 Region: 2 - 214 Aligned: 213 Modelled: 213 Confidence: 100.0% Identity: 44% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 1ooy chain A Region: 2 - 214 Aligned: 213 Modelled: 213 Confidence: 100.0% Identity: 44% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart Phyre2 PDB 2ahu chain A domain 1 Region: 1 - 216 Aligned: 201 Modelled: 202 Confidence: 100.0% Identity: 28% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 1poi chain B Region: 2 - 215 Aligned: 213 Modelled: 214 Confidence: 100.0% Identity: 23% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 3cdk chain D Region: 2 - 206 Aligned: 196 Modelled: 205 Confidence: 100.0% Identity: 54% PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 2ahv chain C Region: 1 - 216 Aligned: 199 Modelled: 200 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 Phyre2 PDB 3gk7 chain A Region: 2 - 198 Aligned: 197 Modelled: 197 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum Phyre2 PDB 2oas chain A Region: 2 - 198 Aligned: 197 Modelled: 195 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. Phyre2 PDB 3eh7 chain A Region: 2 - 198 Aligned: 197 Modelled: 197 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 Phyre2 PDB 2g39 chain A Region: 2 - 198 Aligned: 193 Modelled: 196 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa Phyre2 PDB 2nvv chain F Region: 2 - 200 Aligned: 194 Modelled: 199 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. Phyre2 PDB 2g39 chain A domain 2 Region: 2 - 197 Aligned: 191 Modelled: 195 Confidence: 100.0% Identity: 20% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1xr4 chain A domain 2 Region: 3 - 209 Aligned: 201 Modelled: 201 Confidence: 100.0% Identity: 18% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3d3u chain A Region: 2 - 198 Aligned: 180 Modelled: 183 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 Phyre2 PDB 1xr4 chain B Region: 3 - 213 Aligned: 208 Modelled: 210 Confidence: 99.9% Identity: 17% PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] Phyre2 PDB 2hj0 chain A Region: 4 - 209 Aligned: 205 Modelled: 206 Confidence: 99.9% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). Phyre2 PDB 1m0s chain A domain 1 Region: 1 - 173 Aligned: 137 Modelled: 150 Confidence: 99.7% Identity: 14% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain Phyre2 PDB 1lk5 chain A domain 1 Region: 2 - 171 Aligned: 135 Modelled: 156 Confidence: 99.6% Identity: 16% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain Phyre2 PDB 1uj4 chain A domain 1 Region: 2 - 167 Aligned: 137 Modelled: 134 Confidence: 99.6% Identity: 15% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain Phyre2 PDB 1m0s chain A Region: 1 - 159 Aligned: 121 Modelled: 136 Confidence: 99.5% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) Phyre2 1 d1ooya1 2 c1ooyA_ 3 d2ahua1 4 d1poib_ 5 c3cdkD_ 6 c2ahvC_ 7 c3gk7A_ 8 c2oasA_ 9 c3eh7A_ 10 c2g39A_ 11 c2nvvF_ 12 d2g39a2 13 d1xr4a2 14 c3d3uA_ 15 c1xr4B_ 16 c2hj0A_ 17 d1m0sa1 18 d1lk5a1 19 d1uj4a1 20 c1m0sA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ooya1 100.0 44 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 2 c1ooyA_ 100.0 44 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart 3 d2ahua1 100.0 28 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 4 d1poib_ 100.0 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 5 c3cdkD_ 100.0 54 PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 6 c2ahvC_ 100.0 27 PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 7 c3gk7A_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 8 c2oasA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 9 c3eh7A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 10 c2g39A_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 11 c2nvvF_ 100.0 16 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 12 d2g39a2 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 13 d1xr4a2 100.0 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 14 c3d3uA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 15 c1xr4B_ 99.9 17 PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] 16 c2hj0A_ 99.9 17 PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). 17 d1m0sa1 99.7 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 18 d1lk5a1 99.6 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 19 d1uj4a1 99.6 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 20 c1m0sA_ 99.5 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 21 c3hheA_ not modelled 99.5 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 22 c1lk5C_ not modelled 99.5 23 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 23 c1lkzB_ not modelled 99.5 20 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 24 c2f8mB_ not modelled 99.4 21 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 25 c3kwmC_ not modelled 99.4 22 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 26 c3l7oB_ not modelled 99.4 29 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 27 c1uj6A_ not modelled 99.3 15 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 28 c2pjmA_ not modelled 99.3 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 29 c3u7jA_ not modelled 98.4 17 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 30 c3cdkA_ not modelled 98.3 18 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 31 c1xtzA_ not modelled 98.1 23 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 32 d1k6da_ not modelled 98.1 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 33 c3rrlC_ not modelled 98.1 21 PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 34 d1poia_ not modelled 97.9 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 35 d1ooya2 not modelled 97.9 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 36 d1o8bb1 not modelled 97.7 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 37 d1t9ka_ not modelled 97.7 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 38 c2yvkA_ not modelled 97.6 15 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 39 d1t5oa_ not modelled 97.5 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 40 d2ahua2 not modelled 97.4 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 41 c3a11D_ not modelled 97.4 15 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 42 d1vb5a_ not modelled 97.1 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 43 c3ecsD_ not modelled 96.8 15 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 44 d2g39a1 not modelled 96.8 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 45 d1xr4a1 not modelled 96.7 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 46 d2a0ua1 not modelled 95.3 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 47 d3efba1 not modelled 84.1 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 48 d1o8ba1 not modelled 82.6 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 49 c2w48D_ not modelled 78.9 13 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 50 c3kv1A_ not modelled 72.3 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri 51 c3nzeB_ not modelled 70.8 17 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. 52 c1w2wJ_ not modelled 70.6 18 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 53 d1eg2a_ not modelled 61.8 29 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 54 c1nw6A_ not modelled 52.8 29 PDB header:transferase Chain: A: PDB Molecule:modification methylase rsri; PDBTitle: structure of the beta class n6-adenine dna methyltransferase rsri2 bound to sinefungin 55 c2jcbA_ not modelled 48.0 17 PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein; PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489) 56 d1booa_ not modelled 46.8 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 57 d1wkca_ not modelled 46.7 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 58 d1soua_ not modelled 39.5 25 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 59 c2zifB_ not modelled 37.5 26 PDB header:transferase Chain: B: PDB Molecule:putative modification methylase; PDBTitle: crystal structure of ttha0409, putative dna modification2 methylase from thermus thermophilus hb8- complexed with s-3 adenosyl-l-methionine 60 d2gnpa1 not modelled 34.4 11 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 61 c2z1dA_ not modelled 31.7 26 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 62 d1ovma3 not modelled 28.2 18 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 63 d2r5fa1 not modelled 27.0 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 64 c3lfhF_ not modelled 21.7 12 PDB header:transferase Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis 65 c3b4uB_ not modelled 21.3 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 66 d1zpda3 not modelled 21.3 20 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 67 c1ydmC_ not modelled 20.0 21 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein yqgn; PDBTitle: x-ray structure of northeast structural genomics target sr44 68 c3na8A_ not modelled 17.0 0 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 69 c3g0sA_ not modelled 16.9 10 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 70 c3si9B_ not modelled 16.5 13 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 71 d1pvda3 not modelled 15.2 16 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 72 c2o0mA_ not modelled 14.8 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 73 d2o0ma1 not modelled 14.8 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 74 c3noeA_ not modelled 14.3 15 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 75 d2a6na1 not modelled 14.1 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 76 c3iprC_ not modelled 13.8 18 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 77 d1pdoa_ not modelled 13.5 9 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 78 c2vc6A_ not modelled 13.2 8 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound 79 c3bi8A_ not modelled 13.1 13 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 80 c3mtqA_ not modelled 13.0 28 PDB header:transferase Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution 81 c3cprB_ not modelled 12.9 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 82 c2ri0B_ not modelled 12.8 20 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 83 c3pueA_ not modelled 12.5 5 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 84 d2okga1 not modelled 12.5 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 85 c2r8wB_ not modelled 11.8 18 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 86 c2ehhE_ not modelled 11.6 11 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 87 c3fluD_ not modelled 11.1 11 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 88 d1xkya1 not modelled 10.8 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 89 c2k4mA_ not modelled 10.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 90 c2cdqB_ not modelled 9.9 20 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 91 c3d0cB_ not modelled 9.3 20 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution 92 d1gpea1 not modelled 9.0 40 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 93 c3hdqI_ not modelled 8.7 23 PDB header:isomerase Chain: I: PDB Molecule:udp-galactopyranose mutase; PDBTitle: crystal structure of udp-galactopyranose mutase (oxidized2 form) in complex with substrate 94 d1hl2a_ not modelled 8.6 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 95 c3hy4A_ not modelled 8.3 23 PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase; PDBTitle: structure of human mthfs with n5-iminium phosphate 96 d1f74a_ not modelled 8.3 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 97 c2yxgD_ not modelled 8.1 11 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 98 c3lciA_ not modelled 8.0 11 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 99 c2faoB_ not modelled 7.8 5 PDB header:hydrolase/transferase Chain: B: PDB Molecule:probable atp-dependent dna ligase; PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0