Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	L	L	V	H	P	N	G	S	K	Y	W	R	L	Q	Y	R	Y	E	G	K	Q	K	M	L	A	L	G	V	Y	P	E	I	T	L	A	D	A	R	V	R	R	D	E	A	R	K	L	L	A	N	G	V	D	P	G	D	K	K
Secondary structure
SS confidence
Disorder		?					?																																														?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	N	D	K	V	E	Q	S	K	A	R	T	F	K	E	V	A	I	E	W	H	G	T	N	K	K	W	S	E	D	H	A	H	R	V	L	K	S	L	E	D	N	L	F	A	A	L	G	E	R	N	I	A	E	L	K	T	R	D	L
Secondary structure
SS confidence
Disorder								?	?															?			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	P	I	K	A	V	E	M	S	G	R	L	E	V	A	A	R	L	Q	Q	R	T	T	A	I	M	R	Y	A	V	Q	S	G	L	I	D	Y	N	P	A	Q	E	M	A	G	A	V	A	S	C	N	R	Q	H	R	P	A	L	E
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	K	R	I	P	E	L	L	T	K	I	D	S	Y	T	G	R	P	L	T	R	W	A	I	E	L	T	L	L	I	F	I	R	S	S	E	L	R	F	A	R	W	S	E	I	D	F	E	A	S	I	W	T	I	P	P	E	R	E	P
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	P	G	V	K	H	S	H	R	G	S	K	M	R	T	T	H	L	V	P	L	S	T	Q	A	L	A	I	L	K	Q	I	K	Q	F	Y	G	A	H	D	L	I	F	I	G	D	H	D	S	H	K	P	M	S	E	N	T	V	N	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?																																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	R	V	M	G	Y	D	T	K	V	E	V	C	G	H	G	F	R	T	M	A	C	S	S	L	V	E	S	G	L	W	S	R	D	A	V	E	R	Q	M	S	H	M	A	R	N	S	V	R	A	A	Y	I	H	K	A	E	H	L
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Sequence		E	E	R	R	L	M	L	Q	W	W	A	D	F	L	D	V	N	R	E	R	F	I	S	P	F	E	Y	A	K	I	N	N	P	L	K	Q
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z1b chain A Region: 2 - 353 Aligned: 323 Modelled: 352 Confidence: 100.0% Identity: 16% PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Phyre2 PDB 1p7d chain A Region: 71 - 357 Aligned: 266 Modelled: 287 Confidence: 99.9% Identity: 15% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 3nkh chain B Region: 174 - 370 Aligned: 194 Modelled: 197 Confidence: 99.9% Identity: 22% PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Phyre2 PDB 1ma7 chain A Region: 72 - 372 Aligned: 289 Modelled: 300 Confidence: 99.9% Identity: 14% PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Phyre2 PDB 1crx chain A Region: 73 - 372 Aligned: 288 Modelled: 300 Confidence: 99.9% Identity: 13% PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Phyre2 PDB 1aih chain A Region: 173 - 370 Aligned: 163 Modelled: 168 Confidence: 99.9% Identity: 16% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1a0p chain A Region: 69 - 368 Aligned: 270 Modelled: 300 Confidence: 99.9% Identity: 16% PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Phyre2 PDB 2a3v chain A Region: 73 - 355 Aligned: 269 Modelled: 273 Confidence: 99.9% Identity: 14% PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Phyre2 PDB 1a0p chain A domain 2 Region: 177 - 368 Aligned: 179 Modelled: 192 Confidence: 99.8% Identity: 16% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1f44 chain A domain 2 Region: 172 - 372 Aligned: 189 Modelled: 201 Confidence: 99.8% Identity: 12% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1ae9 chain A Region: 176 - 355 Aligned: 166 Modelled: 180 Confidence: 99.8% Identity: 16% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 5crx chain B domain 2 Region: 172 - 342 Aligned: 162 Modelled: 171 Confidence: 99.6% Identity: 12% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 3ju0 chain A Region: 1 - 69 Aligned: 69 Modelled: 69 Confidence: 99.4% Identity: 68% PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: structure of the arm-type binding domain of hai7 integrase Phyre2 PDB 3jtz chain A Region: 1 - 53 Aligned: 53 Modelled: 53 Confidence: 99.2% Identity: 51% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: structure of the arm-type binding domain of hpi integrase Phyre2 PDB 2kkv chain A Region: 65 - 182 Aligned: 118 Modelled: 118 Confidence: 98.7% Identity: 53% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h Phyre2 PDB 2kj9 chain A Region: 61 - 177 Aligned: 117 Modelled: 117 Confidence: 98.6% Identity: 45% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: nmr structure of intb phage-integrase-like protein fragment2 90-199 from erwinia carotova subsp. atroseptica: northeast3 structural genomics consortium target ewr217e Phyre2 PDB 2kiw chain A Region: 72 - 178 Aligned: 107 Modelled: 107 Confidence: 98.5% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). Phyre2 PDB 2kj5 chain A Region: 65 - 177 Aligned: 113 Modelled: 113 Confidence: 98.4% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c Phyre2 PDB 2kj8 chain A Region: 67 - 177 Aligned: 111 Modelled: 111 Confidence: 98.4% Identity: 27% PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 Phyre2 PDB 2khq chain A Region: 71 - 174 Aligned: 104 Modelled: 104 Confidence: 98.2% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b Phyre2 1 c1z1bA_ 2 d1p7da_ 3 c3nkhB_ 4 c1ma7A_ 5 c1crxA_ 6 d1aiha_ 7 c1a0pA_ 8 c2a3vA_ 9 d1a0pa2 10 d1f44a2 11 d1ae9a_ 12 d5crxb2 13 c3ju0A_ 14 c3jtzA_ 15 c2kkvA_ 16 c2kj9A_ 17 c2kiwA_ 18 c2kj5A_ 19 c2kj8A_ 20 c2khqA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1z1bA_ 100.0 16 PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site 2 d1p7da_ 99.9 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 3 c3nkhB_ 99.9 22 PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus 4 c1ma7A_ 99.9 14 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 5 c1crxA_ 99.9 13 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 6 d1aiha_ 99.9 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 7 c1a0pA_ 99.9 16 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 8 c2a3vA_ 99.9 14 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 9 d1a0pa2 99.8 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 10 d1f44a2 99.8 12 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 11 d1ae9a_ 99.8 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 12 d5crxb2 99.6 12 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 13 c3ju0A_ 99.4 68 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: structure of the arm-type binding domain of hai7 integrase 14 c3jtzA_ 99.2 51 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: structure of the arm-type binding domain of hpi integrase 15 c2kkvA_ 98.7 53 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 16 c2kj9A_ 98.6 45 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: nmr structure of intb phage-integrase-like protein fragment2 90-199 from erwinia carotova subsp. atroseptica: northeast3 structural genomics consortium target ewr217e 17 c2kiwA_ 98.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). 18 c2kj5A_ 98.4 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c 19 c2kj8A_ 98.4 27 PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 20 c2khqA_ 98.2 12 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 21 c2kkpA_ not modelled 98.2 15 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 22 c3lysC_ not modelled 98.2 9 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 23 c2oxoA_ not modelled 98.1 13 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 24 c2khvA_ not modelled 98.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b. 25 c2kd1A_ not modelled 98.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 26 c2kobA_ not modelled 97.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a 27 c2keyA_ not modelled 97.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c 28 c2v6eB_ not modelled 97.2 12 PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna 29 c3nrwA_ not modelled 96.7 9 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 30 c2f4qA_ not modelled 96.4 16 PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib 31 c2h7fX_ not modelled 94.6 17 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 32 c2b9sA_ not modelled 93.0 19 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 33 d1k4ta2 not modelled 90.9 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 34 d1rr8c1 not modelled 90.6 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 35 d1a41a_ not modelled 89.0 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 36 c1a31A_ not modelled 86.2 17 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 37 c3igmA_ not modelled 81.9 11 PDB header:transcription/dna Chain: A: PDB Molecule:pf14_0633 protein; PDBTitle: a 2.2a crystal structure of the ap2 domain of pf14_0633 from p.2 falciparum, bound as a domain-swapped dimer to its cognate dna 38 d1a0pa1 not modelled 79.7 15 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 39 c1nh3A_ not modelled 74.9 17 PDB header:isomerase/dna Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: human topoisomerase i ara-c complex 40 d1gcca_ not modelled 66.8 25 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:GCC-box binding domain 41 d1z1ba1 not modelled 66.7 28 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain 42 c1kjkA_ not modelled 65.9 28 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain 43 d1qu6a2 not modelled 55.4 13 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 44 d1x48a1 not modelled 45.4 11 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 45 c1p4eB_ not modelled 32.5 10 PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex 46 d1x49a1 not modelled 23.8 16 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 47 d1qu6a1 not modelled 23.6 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 48 c2khxA_ not modelled 21.6 14 PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif 49 d1f44a1 not modelled 20.6 11 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 50 d1x47a1 not modelled 19.5 9 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 51 d1o0wa2 not modelled 18.7 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 52 c3adjA_ not modelled 16.5 14 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 53 c3adiC_ not modelled 15.2 12 PDB header:gene regulation/rna Chain: C: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 54 d2b7ta1 not modelled 12.1 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 55 c1or7A_ not modelled 11.9 10 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 56 c3llhB_ not modelled 11.9 15 PDB header:rna binding protein Chain: B: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2 57 c2l33A_ not modelled 11.2 20 PDB header:transcription regulator Chain: A: PDB Molecule:interleukin enhancer-binding factor 3; PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e 58 d2b7va1 not modelled 10.5 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 59 d1d4aa_ not modelled 10.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 60 c2l2nA_ not modelled 10.0 11 PDB header:rna binding protein, plant protein Chain: A: PDB Molecule:hyponastic leave 1; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1 61 c2yt4A_ not modelled 9.9 13 PDB header:rna binding protein Chain: A: PDB Molecule:protein dgcr8; PDBTitle: crystal structure of human dgcr8 core 62 d2dmya1 not modelled 9.7 16 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 63 c3pmrB_ not modelled 9.4 16 PDB header:cell adhesion Chain: B: PDB Molecule:amyloid-like protein 1; PDBTitle: crystal structure of e2 domain of human amyloid precursor-like protein2 1 64 c3kmpA_ not modelled 9.0 18 PDB header:transcription regulator/dna Chain: A: PDB Molecule:smad1-mh1; PDBTitle: crystal structure of smad1-mh1/dna complex 65 d1sfka_ not modelled 8.5 12 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 66 d1bb8a_ not modelled 7.8 23 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:DNA-binding domain from tn916 integrase 67 d1tf5a2 not modelled 7.5 8 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 68 c2ka4B_ not modelled 7.4 33 PDB header:transcription regulator Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: nmr structure of the cbp-taz1/stat2-tad complex 69 d1nkta2 not modelled 7.4 17 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 70 c2l3jA_ not modelled 7.4 20 PDB header:hydrolase/rna Chain: A: PDB Molecule:double-stranded rna-specific editase 1; PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove 71 d1u5ta1 not modelled 7.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 72 c1f8aB_ not modelled 7.2 19 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains 73 d1sfkb_ not modelled 7.1 12 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 74 d1r6ra_ not modelled 7.0 16 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 75 c1r6rA_ not modelled 7.0 16 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 76 c3cuqA_ not modelled 6.9 15 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 77 d1j2oa2 not modelled 6.7 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 78 d2gf5a1 not modelled 6.7 13 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 79 d1di2a_ not modelled 6.6 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 80 d1kwga1 not modelled 6.4 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 81 c2zmeA_ not modelled 6.4 17 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 82 d1uila_ not modelled 6.2 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 83 d1e6vc_ not modelled 6.1 31 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase gamma chain 84 d2dgxa1 not modelled 6.0 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 85 c2eqrA_ not modelled 5.9 3 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor corepressor 1; PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1 86 d2csba1 not modelled 5.9 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 87 c2kpqA_ not modelled 5.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of agrobacterium tumefaciens protein atu1219:2 northeast structural genomics consortium target att14 88 c2zhhA_ not modelled 5.6 16 PDB header:transcription Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr; PDBTitle: crystal structure of soxr 89 d1xc5a1 not modelled 5.6 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 90 c1qu6A_ not modelled 5.6 11 PDB header:transferase Chain: A: PDB Molecule:protein kinase pkr; PDBTitle: structure of the double-stranded rna-binding domain of the2 protein kinase pkr reveals the molecular basis of its3 dsrna-mediated activation 91 d1rw6a_ not modelled 5.5 19 Fold:STAT-like Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein Family:CAPPD, an extracellular domain of amyloid beta A4 protein 92 c2ljhA_ not modelled 5.5 15 PDB header:hydrolase Chain: A: PDB Molecule:double-stranded rna-specific editase adar; PDBTitle: nmr structure of double-stranded rna-specific editase adar 93 d1q08a_ not modelled 5.4 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 94 d1dwka1 not modelled 5.4 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain 95 c2gf5A_ not modelled 5.3 13 PDB header:apoptosis Chain: A: PDB Molecule:fadd protein; PDBTitle: structure of intact fadd (mort1) 96 d1hbnc_ not modelled 5.3 25 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase gamma chain 97 c2jzvA_ not modelled 5.2 38 PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: solution structure of s. aureus prsa-ppiase 98 c2nogA_ not modelled 5.1 10 PDB header:dna binding protein Chain: A: PDB Molecule:iswi protein; PDBTitle: sant domain structure of xenopus remodeling factor iswi 99 c1u5tA_ not modelled 5.1 15 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0