Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1z1bA_

Fold library idPDB HeaderMoleculeTitle
c1z1bA_PDB header: dna binding protein/dnaChain: A: PDB Molecule: integrase;PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site


Added to library: Tue Mar 16 13:54:01 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLH
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)





TTTTT
TTT

S






S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence SWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTT

S
S
BGGG

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TTS
SS
TTTTS







B



TTSS



T
 .........220.........230.........240.........250.........260.........270.........280
Sequence EMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSR
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) T
BGGGTT
TTT

TT
TTTTT
SSBSS

TTS



 .........290.........300.........310.........320.........330.........340........
Sequence YFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQRDDRGREWDKIEIK
Predicted secondary structure























SS confidence



































































Known secondary structure (DSSP) T


SSB


TTT
T
SST



TTS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D