PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3nkhB_

Fold library id	PDB Header	Molecule	Title
c3nkhB_	PDB header: recombination	Chain: B: PDB Molecule: integrase;	PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus

Links to external resources
Added to library: Sun Aug 29 02:34:53 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F Q S N A Y L E L N E I E S I I K D I N T K A Q K X H S G I H K R F Y L F V A L X T E F Q A L N G X R I G E X L A I Q N E D I D F D N K S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
T
S
T
B G G G T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N I N G T I H W F H D E S G G F G V K D T T K T E S S Y R T I G L S S R S C E I L K K A I L E N K K D S K W N D G Y L N R N F V F T N H K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S
T T
S B S S B
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N P X Q T E R F N K I L R E A A K D V G I D K E V S S H I L R H S H I S L L S Q Q G V S L K A I X D R V G H S D H R T T L S I Y S H V T E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B
T T
S
S T T
S T T

. . . . . . . . . 220 . . . . .

Sequence X D K D X X N K L E Q V K L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	Q	S	N	A	Y	L	E	L	N	E	I	E	S	I	I	K	D	I	N	T	K	A	Q	K	X	H	S	G	I	H	K	R	F	Y	L	F	V	A	L	X	T	E	F	Q	A	L	N	G	X	R	I	G	E	X	L	A	I	Q	N	E	D	I	D	F	D	N	K	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T	S																			T		S																														T		B	G	G	G			T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	I	N	G	T	I	H	W	F	H	D	E	S	G	G	F	G	V	K	D	T	T	K	T	E	S	S	Y	R	T	I	G	L	S	S	R	S	C	E	I	L	K	K	A	I	L	E	N	K	K	D	S	K	W	N	D	G	Y	L	N	R	N	F	V	F	T	N	H	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S									S	S	S																															T	T					S	B	S	S	B		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	P	X	Q	T	E	R	F	N	K	I	L	R	E	A	A	K	D	V	G	I	D	K	E	V	S	S	H	I	L	R	H	S	H	I	S	L	L	S	Q	Q	G	V	S	L	K	A	I	X	D	R	V	G	H	S	D	H	R	T	T	L	S	I	Y	S	H	V	T	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B																	T	T			S			S															T	T												S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	X	D	K	D	X	X	N	K	L	E	Q	V	K	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T						T	T