Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP12281
DateThu Jan 5 11:33:06 GMT 2012
Unique Job ID92907c47729bc5c2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2nqqA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
Confidence and coverage
Confidence:100.0% Coverage: 98%
403 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDG
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Disorder  ???????













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   .........70.........80.........90.........100.........110.........120
Sequence  YAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQM
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??
































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   .........130.........140.........150.........160.........170.........180
Sequence  DNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRV
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   .........190.........200.........210.........220.........230.........240
Sequence  ALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA
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   .........250.........260.........270.........280.........290.........300
Sequence  DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN
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   .........310.........320.........330.........340.........350.........360
Sequence  PVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE
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   .........370.........380.........390.........400.........410.
Sequence  LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFGGL
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??




















??











??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2nqq chain A

3D model

Region: 7 - 409
Aligned: 403
Modelled: 403
Confidence: 100.0%
Identity: 100%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q

Phyre2

PDB 1uz5 chain A

3D model

Region: 6 - 407
Aligned: 386
Modelled: 402
Confidence: 100.0%
Identity: 35%
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii

Phyre2

PDB 2fu3 chain A

3D model

Region: 1 - 407
Aligned: 391
Modelled: 407
Confidence: 100.0%
Identity: 36%
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain

Phyre2

PDB 1wu2 chain B

3D model

Region: 6 - 404
Aligned: 372
Modelled: 383
Confidence: 100.0%
Identity: 30%
PDB header:structural genomics,biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein;
PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3

Phyre2

PDB 2nqr chain A domain 2

3D model

Region: 7 - 177
Aligned: 171
Modelled: 171
Confidence: 100.0%
Identity: 99%
Fold: MoeA N-terminal region -like
Superfamily: MoeA N-terminal region -like
Family: MoeA N-terminal region -like

Phyre2

PDB 1uz5 chain A domain 2

3D model

Region: 6 - 177
Aligned: 171
Modelled: 172
Confidence: 100.0%
Identity: 32%
Fold: MoeA N-terminal region -like
Superfamily: MoeA N-terminal region -like
Family: MoeA N-terminal region -like

Phyre2

PDB 1wu2 chain A domain 2

3D model

Region: 6 - 175
Aligned: 170
Modelled: 170
Confidence: 100.0%
Identity: 35%
Fold: MoeA N-terminal region -like
Superfamily: MoeA N-terminal region -like
Family: MoeA N-terminal region -like

Phyre2

PDB 2fts chain A domain 2

3D model

Region: 1 - 176
Aligned: 172
Modelled: 176
Confidence: 100.0%
Identity: 37%
Fold: MoeA N-terminal region -like
Superfamily: MoeA N-terminal region -like
Family: MoeA N-terminal region -like

Phyre2

PDB 2nqr chain A domain 3

3D model

Region: 178 - 325
Aligned: 148
Modelled: 148
Confidence: 100.0%
Identity: 100%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 2fts chain A domain 3

3D model

Region: 178 - 325
Aligned: 148
Modelled: 148
Confidence: 100.0%
Identity: 43%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 1uz5 chain A domain 3

3D model

Region: 178 - 325
Aligned: 143
Modelled: 148
Confidence: 100.0%
Identity: 43%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 1wu2 chain A domain 3

3D model

Region: 177 - 325
Aligned: 133
Modelled: 149
Confidence: 100.0%
Identity: 28%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 2pjk chain A

3D model

Region: 176 - 321
Aligned: 144
Modelled: 146
Confidence: 100.0%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii

Phyre2

PDB 1y5e chain A domain 1

3D model

Region: 176 - 321
Aligned: 137
Modelled: 146
Confidence: 100.0%
Identity: 22%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 1xi8 chain A domain 3

3D model

Region: 177 - 325
Aligned: 113
Modelled: 117
Confidence: 100.0%
Identity: 30%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 2is8 chain A

3D model

Region: 179 - 325
Aligned: 140
Modelled: 147
Confidence: 100.0%
Identity: 22%
PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8

Phyre2

PDB 1jlj chain A

3D model

Region: 176 - 321
Aligned: 138
Modelled: 146
Confidence: 100.0%
Identity: 17%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 1mkz chain A

3D model

Region: 175 - 328
Aligned: 145
Modelled: 154
Confidence: 100.0%
Identity: 18%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 2g2c chain A domain 1

3D model

Region: 176 - 319
Aligned: 136
Modelled: 143
Confidence: 100.0%
Identity: 15%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2

PDB 3kbq chain A

3D model

Region: 179 - 316
Aligned: 131
Modelled: 138
Confidence: 100.0%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum

Phyre2
1

c2nqqA_
2

c1uz5A_
3

c2fu3A_
4

c1wu2B_
5

d2nqra2
6

d1uz5a2
7

d1wu2a2
8

d2ftsa2
9

d2nqra3
10

d2ftsa3
11

d1uz5a3
12

d1wu2a3
13

c2pjkA_
14

d1y5ea1
15

d1xi8a3
16

c2is8A_
17

d1jlja_
18

d1mkza_
19

d2g2ca1
20

c3kbqA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nqqA_



100.0 100 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
2c1uz5A_



100.0 35 PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
3c2fu3A_



100.0 36 PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain
4c1wu2B_



100.0 30 PDB header:structural genomics,biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein;
PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3
5d2nqra2



100.0 99 Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
6d1uz5a2



100.0 32 Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
7d1wu2a2



100.0 35 Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
8d2ftsa2



100.0 37 Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
9d2nqra3



100.0 100 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
10d2ftsa3



100.0 43 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
11d1uz5a3



100.0 43 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
12d1wu2a3



100.0 28 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
13c2pjkA_



100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
14d1y5ea1



100.0 22 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
15d1xi8a3



100.0 30 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
16c2is8A_



100.0 22 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
17d1jlja_



100.0 17 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
18d1mkza_



100.0 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
19d2g2ca1



100.0 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
20c3kbqA_



100.0 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
21c3rfqC_



not modelled 100.0 24 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
22c2g4rB_



not modelled 100.0 18 PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
23d1uuya_



not modelled 100.0 19 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
24d2f7wa1



not modelled 99.9 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
25d1di6a_



not modelled 99.9 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
26d1xi8a2



not modelled 99.7 27 Fold:MoeA N-terminal region -like
Superfamily:MoeA N-terminal region -like
Family:MoeA N-terminal region -like
27d2nqra1



not modelled 99.7 100 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
28d2ftsa1



not modelled 99.4 24 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
29d1wu2a1



not modelled 99.4 18 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
30d1xi8a1



not modelled 99.3 26 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
31d1uz5a1



not modelled 99.2 21 Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
32c2rirA_



not modelled 94.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase, a chain;
PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis
33d1l7da1



not modelled 94.8 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
34c3d4oA_



not modelled 93.6 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit a;
PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
35c3c7cB_



not modelled 92.6 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:octopine dehydrogenase;
PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
36c2yxbA_



not modelled 92.3 23 PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
37d1gpma2



not modelled 91.8 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
38c1l9xA_



not modelled 91.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
39d1l9xa_



not modelled 91.4 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
40d1yq9a1



not modelled 91.2 17 Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
41d7reqa2



not modelled 90.9 25 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
42d1pjca1



not modelled 90.9 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
43d1i7qb_



not modelled 90.6 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
44c3d54D_



not modelled 90.3 24 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
45c3louB_



not modelled 90.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
46d1ccwa_



not modelled 90.2 25 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
47c3myrE_



not modelled 89.6 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda;
PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state
48c3n0vD_



not modelled 89.4 16 PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
49c3en0A_



not modelled 89.2 11 PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
50d1fmfa_



not modelled 89.2 19 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
51c3o1lB_



not modelled 89.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
52d1t3ta2



not modelled 88.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
53c3l4eA_



not modelled 88.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
54c3rgwS_



not modelled 87.7 10 PDB header:oxidoreductase/oxidoreductase
Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk;
PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster
55c1np3B_



not modelled 86.9 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
56d1i1qb_



not modelled 86.9 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
57c3p2yA_



not modelled 86.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:alanine dehydrogenase/pyridine nucleotide transhydrogenase;
PDBTitle: crystal structure of alanine dehydrogenase/pyridine nucleotide2 transhydrogenase from mycobacterium smegmatis
58d1wl8a1



not modelled 86.1 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
59d1qdlb_



not modelled 86.1 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
60d1q7ra_



not modelled 85.9 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
61d1ka9h_



not modelled 85.5 38 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
62d2a9va1



not modelled 85.0 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
63d1bg6a2



not modelled 85.0 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
64c3fijD_



not modelled 84.3 32 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
65c2wpnA_



not modelled 83.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit;
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough
66d1frfs_



not modelled 83.7 13 Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
67c2issF_



not modelled 83.7 28 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
68c1pjcA_



not modelled 83.2 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (l-alanine dehydrogenase);
PDBTitle: l-alanine dehydrogenase complexed with nad
69d1uxja1



not modelled 83.1 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
70d1wuis1



not modelled 82.0 17 Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
71d1y6ja1



not modelled 82.0 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
72d2nv0a1



not modelled 81.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
73d1jvna2



not modelled 81.7 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
74d1agxa_



not modelled 80.8 14 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
75c2d6fA_



not modelled 80.4 16 PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
76c3melC_



not modelled 80.3 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein;
PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150
77c3cumA_



not modelled 80.2 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
78c2y0dB_



not modelled 79.6 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose dehydrogenase;
PDBTitle: bcec mutation y10k
79c3r74B_



not modelled 79.2 21 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
80d1zq1a2



not modelled 78.7 14 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
81c3dfuB_



not modelled 78.6 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein from 6-phosphogluconate
PDBTitle: crystal structure of a putative rossmann-like dehydrogenase (cgl2689)2 from corynebacterium glutamicum at 2.07 a resolution
82c2eezG_



not modelled 78.0 18 PDB header:oxidoreductase
Chain: G: PDB Molecule:alanine dehydrogenase;
PDBTitle: crystal structure of alanine dehydrogenase from themus thermophilus
83d1cc1s_



not modelled 77.8 14 Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
84c1wwkA_



not modelled 77.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
85d4pgaa_



not modelled 77.1 22 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
86d9ldta1



not modelled 77.0 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
87d2naca2



not modelled 77.0 23 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
88c1vpdA_



not modelled 76.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:tartronate semialdehyde reductase;
PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2]
89d1i36a2



not modelled 75.5 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
90d1dlja3



not modelled 75.4 9 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
91c3ihkC_



not modelled 75.2 9 PDB header:transferase
Chain: C: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83
92c3cq9C_



not modelled 75.1 18 PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein lp_1622;
PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114
93c1u4sA_



not modelled 75.1 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: plasmodium falciparum lactate dehydrogenase complexed with 2,6-2 naphthalenedisulphonic acid
94c2i99A_



not modelled 74.8 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:mu-crystallin homolog;
PDBTitle: crystal structure of human mu_crystallin at 2.6 angstrom
95d1ldna1



not modelled 74.6 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
96c2vhyB_



not modelled 73.9 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:alanine dehydrogenase;
PDBTitle: crystal structure of apo l-alanine dehydrogenase from2 mycobacterium tuberculosis
97c3n7uD_



not modelled 73.5 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:formate dehydrogenase;
PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide
98c3k13A_



not modelled 73.4 13 PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase;
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
99c3nxkE_



not modelled 73.4 21 PDB header:hydrolase
Chain: E: PDB Molecule:cytoplasmic l-asparaginase;
PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni
100c3rggD_



not modelled 73.4 15 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
101d1s1ma1



not modelled 73.2 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
102d1vmka_



not modelled 72.7 17 Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
103d3bgsa1



not modelled 72.7 18 Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
104c3lm8D_



not modelled 72.6 19 PDB header:transferase
Chain: D: PDB Molecule:thiamine pyrophosphokinase;
PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677
105c2j6iC_



not modelled 72.5 22 PDB header:oxidoreductase
Chain: C: PDB Molecule:formate dehydrogenase;
PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant
106c3lp6D_



not modelled 72.5 17 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
107c2ppwA_



not modelled 72.4 17 PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
108d1gdha1



not modelled 72.3 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
109c2xecD_



not modelled 72.2 23 PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
110d2naca1



not modelled 72.0 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
111d3bula2



not modelled 71.9 20 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
112c2g76A_



not modelled 71.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of human 3-phosphoglycerate dehydrogenase
113c3e7hA_



not modelled 71.5 23 PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: the crystal structure of the beta subunit of the dna-2 directed rna polymerase from vibrio cholerae o1 biovar3 eltor
114d1k9vf_



not modelled 71.4 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
115d1j4aa1



not modelled 71.4 25 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
116c1y80A_



not modelled 71.1 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica
117c3onoA_



not modelled 70.7 24 PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
118c3he8A_



not modelled 70.7 29 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
119d1o7ja_



not modelled 70.3 17 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
120c2vq3B_



not modelled 70.3 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:metalloreductase steap3;
PDBTitle: crystal structure of the membrane proximal oxidoreductase2 domain of human steap3, the dominant ferric reductase of3 the erythroid transferrin cycle

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0