PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lm8D_

Fold library id	PDB Header	Molecule	Title
c3lm8D_	PDB header: transferase	Chain: D: PDB Molecule: thiamine pyrophosphokinase;	PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677

Links to external resources
Added to library: Sat Aug 28 16:01:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T I N I V A G G P K N L I P D L T G Y T D E H T L W I G V D K G T V T L L D A G I I P V E A F G D F D S I T E Q E R R R I E K A A P A L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G S
G G G G
T T T T T T
S S
S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Y Q A D Q T D L D L A L D W A L E K Q P D I I Q I F G I T G G R A D H F L G N I Q L L Y K G V K T N I K I R L I D K Q N H I Q X F P P G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
S
T T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y D I E K D E N K R Y I S F I P F S E D I H E L T L T G F K Y P L N N C H I T L G S T L C I S N E L I H S R G T F S F V K G I L I X I R S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S B S S
T T
T T S S B
B S S S S B S

. .

Sequence D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	I	N	I	V	A	G	G	P	K	N	L	I	P	D	L	T	G	Y	T	D	E	H	T	L	W	I	G	V	D	K	G	T	V	T	L	L	D	A	G	I	I	P	V	E	A	F	G	D	F	D	S	I	T	E	Q	E	R	R	R	I	E	K	A	A	P	A	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		G	G	G	S			G	G	G	G			T	T							T								T	T	T				S				S		S	T	T														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Y	Q	A	D	Q	T	D	L	D	L	A	L	D	W	A	L	E	K	Q	P	D	I	I	Q	I	F	G	I	T	G	G	R	A	D	H	F	L	G	N	I	Q	L	L	Y	K	G	V	K	T	N	I	K	I	R	L	I	D	K	Q	N	H	I	Q	X	F	P	P	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T			S						S				S																	T	T	T								T	T								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	D	I	E	K	D	E	N	K	R	Y	I	S	F	I	P	F	S	E	D	I	H	E	L	T	L	T	G	F	K	Y	P	L	N	N	C	H	I	T	L	G	S	T	L	C	I	S	N	E	L	I	H	S	R	G	T	F	S	F	V	K	G	I	L	I	X	I	R	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T										S	S									S	B	S	S									T	T			T	T	S	S	B		B	S	S	S							S	B	S
	.	.
Sequence	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)