Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	Y	L	H	I	D	G	R	G	M	K	P	N	G	G	S	R	H	N	P	L	E	A	E	T	I	A	A	W	L	V	A	H	K	D	D	I	E	R	H	Y	G	E	P	L	Y	K	V	V	G	V	V	T	P	F	S	A	Q	V
Secondary structure
SS confidence
Disorder		?							?	?	?	?	?	?	?	?	?	?																							?		?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	A	I	K	M	S	L	R	K	L	E	I	N	G	K	D	E	Q	G	L	L	T	V	G	T	V	H	S	L	Q	G	A	E	R	A	I	V	L	F	S	P	V	Y	S	K	H	E	D	G	R	F	L	D	S	N	S	T	I	L	N
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?																																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	A	V	S	R	A	K	D	S	F	L	V	F	G	D	M	D	L	I	E	M	Q	P	A	F	S	P	R	G	L	L	A	K	Y	L	F	S	S	D	N	N	A	L	Q	F	E	F	Q	K	R	Q	D	L	I	S	A	H	T	Q	I
Secondary structure
SS confidence
Disorder																					?	?		?	?	?	?																								?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	T	L	H	G	V	E	Q	H	D	E	F	L	N	K	T	L	A	G	A	Q	K	K	I	T	I	I	S	P	W	L	S	W	Q	K	V	E	Q	T	G	F	L	A	S	M	A	L	A	R	S	R	G	I	D	I	T	V	V	T	D
Secondary structure
SS confidence
Disorder			?	?	?																		?					?					?	?	?	?	?	?	?	?	?	?							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	N	C	N	I	A	H	V	D	D	D	K	R	Q	E	K	Q	H	L	L	N	D	A	V	E	K	L	N	K	M	G	I	A	T	K	L	V	N	R	V	H	S	K	I	V	I	E	D	E	E	L	L	C	V	G	S	F	N	W	F
Secondary structure
SS confidence
Disorder							?		?	?	?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Sequence		S	A	T	R	E	D	K	Y	Q	R	Y	D	T	S	L	V	Y	R	G	E	G	V	K	N	E	I	K	A	I	Y	G	S	L	D	Q	R	Q	L
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?																							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2wjy chain A Region: 3 - 143 Aligned: 135 Modelled: 135 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Phyre2 PDB 2xzl chain A Region: 3 - 143 Aligned: 135 Modelled: 135 Confidence: 100.0% Identity: 23% PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex Phyre2 PDB 2gk7 chain A Region: 3 - 143 Aligned: 135 Modelled: 141 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core Phyre2 PDB 3hsi chain C Region: 188 - 336 Aligned: 142 Modelled: 149 Confidence: 99.9% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 Phyre2 PDB 1byr chain A Region: 190 - 333 Aligned: 128 Modelled: 144 Confidence: 99.8% Identity: 16% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Nuclease Phyre2 PDB 1v0w chain A domain 2 Region: 190 - 333 Aligned: 138 Modelled: 144 Confidence: 99.8% Identity: 16% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 1v0s chain A Region: 190 - 330 Aligned: 135 Modelled: 141 Confidence: 99.8% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf Phyre2 PDB 1xdp chain A domain 3 Region: 182 - 337 Aligned: 140 Modelled: 156 Confidence: 99.8% Identity: 22% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1v0w chain A domain 1 Region: 177 - 333 Aligned: 156 Modelled: 157 Confidence: 99.8% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 3e1s chain A Region: 47 - 161 Aligned: 109 Modelled: 115 Confidence: 99.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 Phyre2 PDB 1w36 chain G Region: 47 - 142 Aligned: 88 Modelled: 96 Confidence: 99.5% Identity: 17% PDB header:recombination Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex Phyre2 PDB 3lfu chain A Region: 17 - 135 Aligned: 108 Modelled: 119 Confidence: 99.4% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd Phyre2 PDB 1pjr chain A Region: 79 - 135 Aligned: 57 Modelled: 57 Confidence: 99.3% Identity: 19% PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase Phyre2 PDB 3dmn chain A Region: 22 - 135 Aligned: 102 Modelled: 105 Confidence: 99.2% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna helicase; PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1 Phyre2 PDB 1xdo chain B Region: 180 - 331 Aligned: 130 Modelled: 137 Confidence: 99.1% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase Phyre2 PDB 2is6 chain B Region: 66 - 135 Aligned: 70 Modelled: 70 Confidence: 99.0% Identity: 21% PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex Phyre2 PDB 1w36 chain D domain 2 Region: 50 - 142 Aligned: 88 Modelled: 93 Confidence: 99.0% Identity: 15% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1uaa chain B Region: 20 - 135 Aligned: 105 Modelled: 116 Confidence: 98.9% Identity: 16% PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex Phyre2 PDB 2o8r chain A Region: 180 - 331 Aligned: 129 Modelled: 132 Confidence: 98.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Phyre2 PDB 1xdp chain A domain 4 Region: 180 - 331 Aligned: 129 Modelled: 137 Confidence: 98.5% Identity: 20% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 1 c2wjyA_ 2 c2xzlA_ 3 c2gk7A_ 4 c3hsiC_ 5 d1byra_ 6 d1v0wa2 7 c1v0sA_ 8 d1xdpa3 9 d1v0wa1 10 c3e1sA_ 11 c1w36G_ 12 c3lfuA_ 13 c1pjrA_ 14 c3dmnA_ 15 c1xdoB_ 16 c2is6B_ 17 d1w36d2 18 c1uaaB_ 19 c2o8rA_ 20 d1xdpa4 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wjyA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form 2 c2xzlA_ 100.0 23 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex 3 c2gk7A_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core 4 c3hsiC_ 99.9 11 PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 5 d1byra_ 99.8 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 6 d1v0wa2 99.8 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 7 c1v0sA_ 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf 8 d1xdpa3 99.8 22 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 9 d1v0wa1 99.8 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 10 c3e1sA_ 99.6 20 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 11 c1w36G_ 99.5 17 PDB header:recombination Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex 12 c3lfuA_ 99.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd 13 c1pjrA_ 99.3 19 PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase 14 c3dmnA_ 99.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna helicase; PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1 15 c1xdoB_ 99.1 16 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 16 c2is6B_ 99.0 21 PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex 17 d1w36d2 99.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 18 c1uaaB_ 98.9 16 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex 19 c2o8rA_ 98.6 15 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 20 d1xdpa4 98.5 20 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 21 d2o8ra3 not modelled 98.4 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 22 d2o8ra4 not modelled 98.2 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 23 c1qhhD_ not modelled 98.1 14 PDB header:hydrolase Chain: D: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 24 c2pjrB_ not modelled 97.9 18 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 25 d1uaaa2 not modelled 97.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 26 d1w36b2 not modelled 97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 27 d1pjra2 not modelled 97.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 28 c1w36E_ not modelled 97.1 19 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 29 c2c1lA_ not modelled 97.0 22 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease 30 d1w36c2 not modelled 96.5 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 31 c1nopB_ not modelled 95.6 20 PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide 32 d1q32a2 not modelled 95.5 26 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 33 d1jy1a2 not modelled 95.3 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 34 c1w36F_ not modelled 94.8 13 PDB header:recombination Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain; PDBTitle: recbcd:dna complex 35 c1q32C_ not modelled 94.3 29 PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase 36 c3sq3C_ not modelled 93.7 29 PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant 37 d2f5tx2 not modelled 91.3 13 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:TrmB middle domain-like 38 c2pjrF_ not modelled 91.1 20 PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 39 c2f5tX_ not modelled 88.6 13 PDB header:transcription Chain: X: PDB Molecule:archaeal transcriptional regulator trmb; PDBTitle: crystal structure of the sugar binding domain of the archaeal2 transcriptional regulator trmb 40 d1pzta_ not modelled 87.7 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 41 c3lw6A_ not modelled 80.9 17 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 42 c1qhhA_ not modelled 66.1 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 43 d1jy1a1 not modelled 57.9 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 44 c1t3gB_ not modelled 33.0 9 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 45 c1qhhB_ not modelled 29.4 21 PDB header:hydrolase Chain: B: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 46 d1gz0a2 not modelled 23.9 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 47 d1s2da_ not modelled 23.6 21 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 48 d1f8ya_ not modelled 22.1 13 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 49 c3oziB_ not modelled 21.9 13 PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 50 d1qzqa1 not modelled 20.9 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 51 c3fniA_ not modelled 17.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 52 c3dy0B_ not modelled 17.4 33 PDB header:blood clotting, hydrolase inhibitor Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved pci bound to heparin 53 c3p1wA_ not modelled 16.6 20 PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c 54 d1q32a1 not modelled 16.5 24 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 55 c1lq8H_ not modelled 16.3 33 PDB header:blood clotting Chain: H: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved protein c inhibitor 56 c3cgiD_ not modelled 16.2 21 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 57 d1gz0f2 not modelled 15.8 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 58 c3mpbA_ not modelled 15.6 24 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 59 d1o98a1 not modelled 14.5 18 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 60 c3pstA_ not modelled 12.6 20 PDB header:nuclear protein Chain: A: PDB Molecule:protein doa1; PDBTitle: crystal structure of pul and pfu(mutate) domain 61 d1r89a1 not modelled 12.5 24 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 62 c3ia0c_ not modelled 12.4 18 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 63 c3fd0B_ not modelled 12.1 12 PDB header:lyase Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution 64 c3l3fX_ not modelled 12.1 20 PDB header:protein binding Chain: X: PDB Molecule:protein doa1; PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3 65 c2l82A_ not modelled 12.1 14 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 66 c2a5hC_ not modelled 12.0 8 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 67 d1xo1a2 not modelled 12.0 15 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 68 c3ktbD_ not modelled 11.5 19 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 69 c2y0oA_ not modelled 10.9 28 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 70 c2z86D_ not modelled 10.8 15 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 71 d1utaa_ not modelled 9.5 21 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 72 c3ckvA_ not modelled 9.5 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein 73 d1x94a_ not modelled 8.9 17 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 74 d1vmea1 not modelled 8.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 75 d1j5pa4 not modelled 8.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 76 c3kgkA_ not modelled 8.5 15 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 77 c2r60A_ not modelled 8.4 9 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 78 c3iabB_ not modelled 8.3 25 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna 79 c2bcwC_ not modelled 8.2 13 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: coordinates of the n-terminal domain of ribosomal protein2 l11,c-terminal domain of ribosomal protein l7/l12 and a3 portion of the g' domain of elongation factor g, as fitted4 into cryo-em map of an escherichia coli 70s*ef-5 g*gdp*fusidic acid complex 80 c2x0dA_ not modelled 7.9 7 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 81 d1o0sa2 not modelled 7.6 12 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 82 d1fyva_ not modelled 7.5 11 Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain 83 c2zrrA_ not modelled 7.5 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 84 d1w36d1 not modelled 7.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 85 c3h16A_ not modelled 6.1 16 PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans 86 c2dc1A_ not modelled 6.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 87 c3cseA_ not modelled 6.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 88 c3nklA_ not modelled 5.9 15 PDB header:oxidoreductase/lyase Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase; PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri 89 c3cvjB_ not modelled 5.7 17 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 90 c2ihnA_ not modelled 5.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 91 c3ht4B_ not modelled 5.5 14 PDB header:lyase Chain: B: PDB Molecule:aluminum resistance protein; PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213 92 c3nkuA_ not modelled 5.5 20 PDB header:protein transport Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila 93 c2k19A_ not modelled 5.4 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi 94 c2bpbB_ not modelled 5.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 95 c1o98A_ not modelled 5.2 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 96 c2x3yA_ not modelled 5.2 20 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0