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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3l3fX_

Fold library idPDB HeaderMoleculeTitle
c3l3fX_PDB header: protein bindingChain: X: PDB Molecule: protein doa1;PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3


Added to library: Sat Dec 11 13:43:46 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPXSYRDQVVQFILKNTXKVLPV
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Known secondary structure (DSSP)

TTS

STTS


TTS
TT

GGG


S


 .........80.........90.........100.........110.........120.........130.........140
Sequence KQYLIXENYNPDTIFNGIVKINSNEKTFDDEILAQIGGALHDIDESWELLLSFANTIRSNWEIKTPAYDI
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S
T
TTT

S

 .........150.........160.........170.........180.........190.........200.........210
Sequence VRLIVKKLPYSSDIKDYIEEGLGNKNITLTXLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQ
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Known secondary structure (DSSP) GGG
S
GGGGTT
SSTT
TTTTSTTS
S

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT
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Known secondary structure (DSSP)

T
S
TTTTTTSTS
 .........290.........300.........310......
Sequence VEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDLS
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Known secondary structure (DSSP)
TGGG
TTST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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