Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	V	L	R	S	G	I	V	T	M	L	L	L	A	A	F	S	V	Q	A	A	C	T	W	P	A	W	E	Q	F	K	K	D	Y	I	S	Q	E	G	R	V	I	D	P	S	D	A	R	K	I	T	T	S	E	G	Q	S	Y	G
Secondary structure
SS confidence
Disorder		?																		?		?	?	?		?																							?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	F	S	A	L	A	A	N	D	R	A	A	F	D	N	I	L	D	W	T	Q	N	N	L	A	Q	G	S	L	K	E	R	L	P	A	W	L	W	G	K	K	E	N	S	K	W	E	V	L	D	S	N	S	A	S	D	G	D	V	W
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?									?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	A	W	S	L	L	E	A	G	R	L	W	K	E	Q	R	Y	T	D	I	G	S	A	L	L	K	R	I	A	R	E	E	V	V	T	V	P	G	L	G	S	M	L	L	P	G	K	V	G	F	A	E	D	N	S	W	R	F	N	P
Secondary structure
SS confidence
Disorder												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	Y	L	P	P	T	L	A	Q	Y	F	T	R	F	G	A	P	W	T	T	L	R	E	T	N	Q	R	L	L	L	E	T	A	P	K	G	F	S	P	D	W	V	R	Y	E	K	D	K	G	W	Q	L	K	A	E	K	T	L	I	S
Secondary structure
SS confidence
Disorder																																																	?	?	?				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	Y	D	A	I	R	V	Y	M	W	V	G	M	M	P	D	S	D	P	Q	K	A	R	M	L	N	R	F	K	P	M	A	T	F	T	E	K	N	G	Y	P	P	E	K	V	D	V	A	T	G	K	A	Q	G	K	G	P	V	G	F
Secondary structure
SS confidence
Disorder																	?	?																																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	A	A	M	L	P	F	L	Q	N	R	D	A	Q	A	V	Q	R	Q	R	V	A	D	N	F	P	G	S	D	A	Y	Y	N	Y	V	L	T	L	F	G	Q	G	W	D	Q	H	R	F	R	F	S	T	K	G	E	L	L	P	D	W
Secondary structure
SS confidence
Disorder														?						?	?	?	?	?	?	?	?	?	?	?	?																?													?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		G	Q	E	C	A	N	S	H
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qxq chain D Region: 23 - 360 Aligned: 338 Modelled: 338 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase; PDBTitle: structure of the bacterial cellulose synthase subunit z in complex2 with cellopentaose Phyre2 PDB 1wzz chain A domain 1 Region: 26 - 344 Aligned: 302 Modelled: 319 Confidence: 100.0% Identity: 26% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1wu4 chain A domain 1 Region: 37 - 362 Aligned: 306 Modelled: 326 Confidence: 100.0% Identity: 22% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1h12 chain A Region: 42 - 350 Aligned: 297 Modelled: 298 Confidence: 100.0% Identity: 22% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1kwf chain A Region: 26 - 348 Aligned: 308 Modelled: 319 Confidence: 100.0% Identity: 22% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1v5d chain A Region: 26 - 348 Aligned: 312 Modelled: 318 Confidence: 100.0% Identity: 18% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 3ren chain B Region: 27 - 357 Aligned: 299 Modelled: 323 Confidence: 100.0% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase, family 8; PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens Phyre2 PDB 2zzr chain A Region: 35 - 198 Aligned: 155 Modelled: 159 Confidence: 94.2% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase; PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae Phyre2 PDB 1fp3 chain A Region: 74 - 211 Aligned: 128 Modelled: 133 Confidence: 93.9% Identity: 12% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: N-acylglucosamine (NAG) epimerase Phyre2 PDB 2afa chain A domain 1 Region: 35 - 228 Aligned: 183 Modelled: 185 Confidence: 93.3% Identity: 8% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: N-acylglucosamine (NAG) epimerase Phyre2 PDB 3pmm chain A Region: 38 - 310 Aligned: 243 Modelled: 238 Confidence: 90.2% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3k11 chain A Region: 116 - 305 Aligned: 182 Modelled: 181 Confidence: 88.9% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution Phyre2 PDB 1nxc chain A Region: 27 - 321 Aligned: 270 Modelled: 274 Confidence: 83.2% Identity: 15% Fold: alpha/alpha toroid Superfamily: Seven-hairpin glycosidases Family: Class I alpha-1;2-mannosidase, catalytic domain Phyre2 PDB 3k7x chain A Region: 55 - 243 Aligned: 159 Modelled: 163 Confidence: 74.6% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. Phyre2 PDB 3eu8 chain D Region: 199 - 292 Aligned: 90 Modelled: 94 Confidence: 69.7% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution Phyre2 PDB 3qsp chain B Region: 119 - 291 Aligned: 157 Modelled: 173 Confidence: 68.0% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose Phyre2 PDB 1g9g chain A Region: 42 - 84 Aligned: 43 Modelled: 43 Confidence: 55.3% Identity: 30% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1x9d chain A Region: 27 - 307 Aligned: 256 Modelled: 260 Confidence: 47.2% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue Phyre2 PDB 1x9d chain A domain 1 Region: 27 - 307 Aligned: 256 Modelled: 260 Confidence: 47.2% Identity: 14% Fold: alpha/alpha toroid Superfamily: Seven-hairpin glycosidases Family: Class I alpha-1;2-mannosidase, catalytic domain Phyre2 PDB 2gz6 chain B Region: 70 - 249 Aligned: 178 Modelled: 180 Confidence: 42.9% Identity: 7% PDB header:isomerase Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase; PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a Phyre2 1 c3qxqD_ 2 d1wzza1 3 d1wu4a1 4 d1h12a_ 5 d1kwfa_ 6 d1v5da_ 7 c3renB_ 8 c2zzrA_ 9 d1fp3a_ 10 d2afaa1 11 c3pmmA_ 12 c3k11A_ 13 d1nxca_ 14 c3k7xA_ 15 c3eu8D_ 16 c3qspB_ 17 d1g9ga_ 18 c1x9dA_ 19 d1x9da1 20 c2gz6B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qxqD_ 100.0 100 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase; PDBTitle: structure of the bacterial cellulose synthase subunit z in complex2 with cellopentaose 2 d1wzza1 100.0 26 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 3 d1wu4a1 100.0 22 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 4 d1h12a_ 100.0 22 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 5 d1kwfa_ 100.0 22 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 6 d1v5da_ 100.0 18 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 7 c3renB_ 100.0 14 PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase, family 8; PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens 8 c2zzrA_ 94.2 14 PDB header:hydrolase Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase; PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae 9 d1fp3a_ 93.9 12 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 10 d2afaa1 93.3 8 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 11 c3pmmA_ 90.2 11 PDB header:hydrolase Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 12 c3k11A_ 88.9 7 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution 13 d1nxca_ 83.2 15 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 14 c3k7xA_ 74.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. 15 c3eu8D_ 69.7 14 PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution 16 c3qspB_ 68.0 15 PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose 17 d1g9ga_ 55.3 30 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 18 c1x9dA_ 47.2 14 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 19 d1x9da1 47.2 14 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 20 c2gz6B_ 42.9 7 PDB header:isomerase Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase; PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a 21 c3e6uA_ not modelled 37.6 14 PDB header:signaling protein Chain: A: PDB Molecule:lanc-like protein 1; PDBTitle: crystal structure of human lancl1 22 d1hcua_ not modelled 34.1 12 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 23 d2p0va1 not modelled 31.2 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 24 c2p0vA_ not modelled 31.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58 25 c3okfA_ not modelled 21.6 24 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 26 d2g0da1 not modelled 18.0 14 Fold:alpha/alpha toroid Superfamily:LanC-like Family:LanC-like 27 c3rbbA_ not modelled 17.4 30 PDB header:viral protein, protein binding Chain: A: PDB Molecule:protein nef; PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain 28 d2nvpa1 not modelled 16.9 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 29 d1l1ya_ not modelled 15.8 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 30 c1l2aD_ not modelled 15.8 16 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 31 d2nefa_ not modelled 15.8 29 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 32 c3jtgA_ not modelled 15.7 23 PDB header:transcription Chain: A: PDB Molecule:ets-related transcription factor elf-3; PDBTitle: crystal structure of mouse elf3 c-terminal dna-binding domain in2 complex with type ii tgf-beta receptor promoter dna 33 c3gt5A_ not modelled 15.1 10 PDB header:isomerase Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase; PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa 34 d1nc5a_ not modelled 13.7 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Hypothetical protein YteR 35 c1p0oA_ not modelled 13.0 30 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles 36 c3l55B_ not modelled 12.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase; PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii 37 c3ik5A_ not modelled 12.6 25 PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80) 38 c2d3wB_ not modelled 12.1 29 PDB header:biosynthetic protein Chain: B: PDB Molecule:probable atp-dependent transporter sufc; PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery 39 c2dcoA_ not modelled 10.8 63 PDB header:membrane protein Chain: A: PDB Molecule:s1p4 first extracellular loop peptidomimetic; PDBTitle: s1p4 first extracellular loop peptidomimetic 40 c2xi1A_ not modelled 10.0 30 PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample 41 d1jb7a1 not modelled 9.8 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 42 c3nfvA_ not modelled 9.0 13 PDB header:lyase Chain: A: PDB Molecule:alginate lyase; PDBTitle: crystal structure of an alginate lyase (bacova_01668) from bacteroides2 ovatus at 1.95 a resolution 43 d1efnb_ not modelled 8.9 30 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 44 d1puee_ not modelled 8.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ets domain 45 d1lm7a_ not modelled 8.3 20 Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Plakin repeat Family:Plakin repeat 46 c2oylB_ not modelled 7.9 15 PDB header:hydrolase Chain: B: PDB Molecule:endoglycoceramidase ii; PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex 47 d1rmva_ not modelled 6.8 24 Fold:Four-helical up-and-down bundle Superfamily:TMV-like viral coat proteins Family:TMV-like viral coat proteins 48 d1g99a2 not modelled 6.6 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 49 d1pgl21 not modelled 6.6 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 50 d1pgw21 not modelled 6.5 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 51 d1ny721 not modelled 6.4 13 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 52 d1xjva1 not modelled 6.3 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 53 d1ei7a_ not modelled 6.2 21 Fold:Four-helical up-and-down bundle Superfamily:TMV-like viral coat proteins Family:TMV-like viral coat proteins 54 c1lf6A_ not modelled 6.1 20 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase 55 c3pdmP_ not modelled 6.1 24 PDB header:virus Chain: P: PDB Molecule:coat protein; PDBTitle: hibiscus latent singapore virus 56 d2d5ja1 not modelled 5.9 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyl Hydrolase Family 88 57 d1vtmp_ not modelled 5.9 17 Fold:Four-helical up-and-down bundle Superfamily:TMV-like viral coat proteins Family:TMV-like viral coat proteins 58 c3sm3A_ not modelled 5.9 12 PDB header:transferase Chain: A: PDB Molecule:sam-dependent methyltransferases; PDBTitle: crystal structure of sam-dependent methyltransferases q8puk2_metma2 from methanosarcina mazei. northeast structural genomics consortium3 target mar262. 59 c3mtiA_ not modelled 5.7 19 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a 60 c2bfuL_ not modelled 5.6 10 PDB header:virus Chain: L: PDB Molecule:cowpea mosaic virus, large (l) subunit; PDBTitle: x-ray structure of cpmv top component 61 c1bmv2_ not modelled 5.4 14 PDB header:virus/rna Chain: 2: PDB Molecule:protein (icosahedral virus - b and c domain); PDBTitle: protein-rna interactions in an icosahedral virus at 3.02 angstroms resolution 62 c1ta9A_ not modelled 5.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe 63 c2ov2O_ not modelled 5.1 29 PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) 64 c2yfvC_ not modelled 5.0 35 PDB header:cell cycle Chain: C: PDB Molecule:scm3; PDBTitle: the heterotrimeric complex of kluyveromyces lactis scm3, cse4 and h4

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0