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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3ik5A_ | PDB header: viral protein/signaling protein | Chain: A: PDB Molecule: protein nef; | PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide2 (a63-r80) |
Added to library: Sun Aug 29 07:00:06 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | V | S | V | R | P | K | V | P | L | R | T | M | S | Y | K | L | A | I | D | M | S | H | F | I | K | E | K | G | G | L | E | G | I | Y | Y | S | A | R | R | H | R | I | L | D | I | Y | L | E | K | E | E | G | I | I | P | D | W | Q | D | Y | T | S | G | P | G | I | R | Y | P | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | T | T | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | B | S | B | S | S | S | B | B | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Sequence | T | F | G | W | L | W | K | L | V | P | V | P | A | Q | T | S | Q | W | D | D | P | W | G | E | V | L | A | W | K | F | D | P | T | L | A | Y | T | Y | E | A | Y | V | R | Y | P | E | E | F | G | |||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | S | T | T | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | G | T | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G |
Download: | PDB structure | FASTA sequence |
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