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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | Fold | Superfamily | Family |
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d2nefa_ | Regulatory factor Nef | Regulatory factor Nef | Regulatory factor Nef |
Added to library: Tue Mar 16 14:25:56 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | A | W | L | E | A | Q | E | E | E | E | V | G | F | P | V | T | P | Q | V | P | L | R | P | M | T | Y | K | A | A | V | D | L | S | H | F | L | K | E | K | G | G | L | E | G | L | I | H | S | Q | R | R | Q | D | I | L | D | L | W | I | Y | H | T | Q | G | Y | F | P | D | W | Q |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | S | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Sequence | N | Y | T | P | G | P | G | I | R | Y | P | L | T | F | G | W | C | Y | K | L | V | P | V | E | P | E | K | L | E | E | A | N | K | D | D | P | E | R | E | V | L | E | W | R | F | D | S | R | L | A | F | H | H | M | A | R | E | L | H | P | E | Y | F | K | N | A | ||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | S | S | S | S | S | B | B | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | T | T | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | G | T | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G |
Download: | PDB structure | FASTA sequence |
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