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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1bmv2_

Fold library idPDB HeaderMoleculeTitle
c1bmv2_PDB header: virus/rnaChain: 2: PDB Molecule: protein (icosahedral virus - b and c domain);PDBTitle: protein-rna interactions in an icosahedral virus at 3.02 angstroms resolution


Added to library: Tue Mar 16 12:38:34 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence METNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKG
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Known secondary structure (DSSP)



STTSS









TTTT
TT

SSSSS

TTS
S
B
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence MIKMVATVGIPENTGIALACAMNSSIRGRASSDIYTICSQDCELWNPACTKAMTMSFNPNPCSDAWSLEF
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TT


S


SS


SSSTTSSS
TTT
S

S
TTSS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSV
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Known secondary structure (DSSP) TTT


SS

SS

SS







SSS

TT
SBS



 .........220.........230.........240.........250.........260.........270.........280
Sequence KRMPLSIGGGAGAKSAILMNMPNAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFEA
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Known secondary structure (DSSP) S

SS
TT

TGGGSS
S
TTSB


TTS
TT
GGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence FPHKLVQFGEIQEKVVLKFSQEEFLTAWSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTI
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Known secondary structure (DSSP) SS


TT


GGG
SS
S


TT

TTT

S
SS
BB
SSS

 .........360.........370....
Sequence IENMCAYGLNPGISGSRLLGTIPQ
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S










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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