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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3rbbA_ | PDB header: viral protein, protein binding | Chain: A: PDB Molecule: protein nef; | PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain |
Added to library: Sat Apr 30 08:52:37 2011 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | F | P | V | R | P | Q | V | P | L | R | P | M | T | Y | K | A | A | L | D | I | S | H | F | L | K | E | K | G | G | L | E | G | L | I | W | S | Q | R | R | Q | E | I | L | D | L | W | I | Y | H | T | Q | G | Y | F | P | D | W | Q | N | Y | T | P | G | P | G | I | R | Y | P | L |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | T | T | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | B | S | B | S | S | S | B | B | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Sequence | T | F | G | W | C | F | K | L | V | P | V | E | P | E | K | V | E | E | A | N | E | G | E | N | N | S | L | L | H | P | M | S | L | H | G | M | E | D | A | E | K | E | V | L | V | W | R | F | D | S | K | L | A | F | H | H | M | A | R | E | L | H | P | E | Y | Y | K | |||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | T | T | ![]() | ![]() | ![]() | ![]() | G | G | G | S | T | T | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | G | T | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | T |
Download: | PDB structure | FASTA sequence |
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