Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	N	I	R	I	E	E	D	L	L	G	T	R	E	V	P	A	D	A	Y	Y	G	V	H	T	L	R	A	I	E	N	F	Y	I	S	N	N	K	I	S	D	I	P	E	F	V	R	G	M	V	M	V	K	K	A	A	A	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																													?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	N	K	E	L	Q	T	I	P	K	S	V	A	N	A	I	I	A	A	C	D	E	V	L	N	N	G	K	C	M	D	Q	F	P	V	D	V	Y	Q	G	G	A	G	T	S	V	N	M	N	T	N	E	V	L	A	N	I	G	L	E
Secondary structure
SS confidence
Disorder																																									?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	M	G	H	Q	K	G	E	Y	Q	Y	L	N	P	N	D	H	V	N	K	C	Q	S	T	N	D	A	Y	P	T	G	F	R	I	A	V	Y	S	S	L	I	K	L	V	D	A	I	N	Q	L	R	E	G	F	E	R	K	A	V	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	Q	D	I	L	K	M	G	R	T	Q	L	Q	D	A	V	P	M	T	L	G	Q	E	F	R	A	F	S	I	L	L	K	E	E	V	K	N	I	Q	R	T	A	E	L	L	L	E	V	N	L	G	A	T	A	I	G	T	G	L	N
Secondary structure
SS confidence
Disorder																																														?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	P	K	E	Y	S	P	L	A	V	K	K	L	A	E	V	T	G	F	P	C	V	P	A	E	D	L	I	E	A	T	S	D	C	G	A	Y	V	M	V	H	G	A	L	K	R	L	A	V	K	M	S	K	I	C	N	D	L	R	L
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	S	S	G	P	R	A	G	L	N	E	I	N	L	P	E	L	Q	A	G	S	S	I	M	P	A	K	V	N	P	V	V	P	E	V	V	N	Q	V	C	F	K	V	I	G	N	D	T	T	V	T	M	A	A	E	A	G	Q	L	Q
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	N	V	M	E	P	V	I	G	Q	A	M	F	E	S	V	H	I	L	T	N	A	C	Y	N	L	L	E	K	C	I	N	G	I	T	A	N	K	E	V	C	E	G	Y	V	Y	N	S	I	G	I	V	T	Y	L	N	P	F	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Sequence		H	H	N	G	D	I	V	G	K	I	C	A	E	T	G	K	S	V	R	E	V	V	L	E	R	G	L	L	T	E	A	E	L	D	D	I	F	S	V	Q	N	L	M	H	P	A	Y	K	A	K	R	Y	T	D	E	S	E	Q
Secondary structure
SS confidence
Disorder																									?			?																	?	?											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jsw chain A Region: 1 - 458 Aligned: 458 Modelled: 458 Confidence: 100.0% Identity: 100% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1j3u chain A Region: 5 - 469 Aligned: 462 Modelled: 465 Confidence: 100.0% Identity: 50% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1vdk chain A Region: 6 - 465 Aligned: 456 Modelled: 460 Confidence: 100.0% Identity: 42% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1yfm chain A Region: 5 - 463 Aligned: 448 Modelled: 459 Confidence: 100.0% Identity: 38% PDB header:lyase Chain: A: PDB Molecule:fumarase; PDBTitle: recombinant yeast fumarase Phyre2 PDB 1yfm chain A Region: 5 - 463 Aligned: 448 Modelled: 459 Confidence: 100.0% Identity: 38% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1fuo chain A Region: 5 - 462 Aligned: 455 Modelled: 458 Confidence: 100.0% Identity: 40% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 3no9 chain C Region: 2 - 464 Aligned: 447 Modelled: 450 Confidence: 100.0% Identity: 40% PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis Phyre2 PDB 3ocf chain B Region: 6 - 444 Aligned: 428 Modelled: 439 Confidence: 100.0% Identity: 52% PDB header:lyase Chain: B: PDB Molecule:fumarate lyase:delta crystallin; PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form Phyre2 PDB 3e04 chain C Region: 5 - 418 Aligned: 412 Modelled: 414 Confidence: 100.0% Identity: 40% PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase Phyre2 PDB 1jsw chain C Region: 5 - 417 Aligned: 413 Modelled: 413 Confidence: 100.0% Identity: 100% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 3gtd chain B Region: 4 - 409 Aligned: 399 Modelled: 406 Confidence: 100.0% Identity: 37% PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii Phyre2 PDB 3r6y chain G Region: 5 - 398 Aligned: 381 Modelled: 394 Confidence: 100.0% Identity: 52% PDB header:lyase Chain: G: PDB Molecule:aspartase; PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1 Phyre2 PDB 2pfm chain A Region: 22 - 473 Aligned: 411 Modelled: 443 Confidence: 100.0% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis Phyre2 PDB 1re5 chain A Region: 20 - 478 Aligned: 416 Modelled: 445 Confidence: 100.0% Identity: 21% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1c3c chain A Region: 22 - 475 Aligned: 407 Modelled: 442 Confidence: 100.0% Identity: 19% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1q5n chain A Region: 22 - 476 Aligned: 411 Modelled: 441 Confidence: 100.0% Identity: 18% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1tj7 chain A Region: 22 - 478 Aligned: 426 Modelled: 454 Confidence: 100.0% Identity: 19% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 2e9f chain C Region: 31 - 478 Aligned: 416 Modelled: 433 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine Phyre2 PDB 1i0a chain A Region: 22 - 478 Aligned: 424 Modelled: 448 Confidence: 100.0% Identity: 18% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1hy0 chain A Region: 31 - 478 Aligned: 415 Modelled: 424 Confidence: 100.0% Identity: 19% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 1 d1jswa_ 2 d1j3ua_ 3 d1vdka_ 4 c1yfmA_ 5 d1yfma_ 6 d1fuoa_ 7 c3no9C_ 8 c3ocfB_ 9 c3e04C_ 10 d1jswc_ 11 c3gtdB_ 12 c3r6yG_ 13 c2pfmA_ 14 d1re5a_ 15 d1c3ca_ 16 d1q5na_ 17 d1tj7a_ 18 c2e9fC_ 19 d1i0aa_ 20 d1hy0a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jswa_ 100.0 100 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 2 d1j3ua_ 100.0 50 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 3 d1vdka_ 100.0 42 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 4 c1yfmA_ 100.0 38 PDB header:lyase Chain: A: PDB Molecule:fumarase; PDBTitle: recombinant yeast fumarase 5 d1yfma_ 100.0 38 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 6 d1fuoa_ 100.0 40 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 7 c3no9C_ 100.0 40 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis 8 c3ocfB_ 100.0 52 PDB header:lyase Chain: B: PDB Molecule:fumarate lyase:delta crystallin; PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form 9 c3e04C_ 100.0 40 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase 10 d1jswc_ 100.0 100 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 11 c3gtdB_ 100.0 37 PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii 12 c3r6yG_ 100.0 52 PDB header:lyase Chain: G: PDB Molecule:aspartase; PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1 13 c2pfmA_ 100.0 19 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis 14 d1re5a_ 100.0 21 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 15 d1c3ca_ 100.0 19 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 16 d1q5na_ 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 17 d1tj7a_ 100.0 19 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 18 c2e9fC_ 100.0 21 PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine 19 d1i0aa_ 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 20 d1hy0a_ 100.0 19 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 21 d1k62a_ not modelled 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 22 d1tjva_ not modelled 100.0 19 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 23 c3c8tA_ not modelled 100.0 18 PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 24 c2vd6B_ not modelled 100.0 16 PDB header:lyase Chain: B: PDB Molecule:adenylosuccinate lyase; PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate. 25 d1dofa_ not modelled 100.0 17 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 26 c1yisA_ not modelled 100.0 15 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase 27 c3bhgA_ not modelled 100.0 12 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila 28 c2ptsA_ not modelled 100.0 13 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase 29 c2qgaC_ not modelled 100.0 17 PDB header:lyase Chain: C: PDB Molecule:adenylosuccinate lyase; PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound 30 c2fenA_ not modelled 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme; PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2 31 d1f1oa_ not modelled 100.0 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 32 c2xgvA_ not modelled 31.8 13 PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) 33 d2ce7a1 not modelled 27.0 18 Fold:FtsH protease domain-like Superfamily:FtsH protease domain-like Family:FtsH protease domain-like 34 d2di4a1 not modelled 26.1 19 Fold:FtsH protease domain-like Superfamily:FtsH protease domain-like Family:FtsH protease domain-like 35 c2di4B_ not modelled 21.1 21 PDB header:hydrolase Chain: B: PDB Molecule:cell division protein ftsh homolog; PDBTitle: crystal structure of the ftsh protease domain 36 c3lq9B_ not modelled 20.9 26 PDB header:signaling protein Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein; PDBTitle: crystal strucure of human redd1, a hypoxia-induced regulator2 of mtor 37 d1lbua1 not modelled 20.3 26 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 38 d2dy1a3 not modelled 19.5 15 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 39 c2ctoA_ not modelled 15.4 42 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:novel protein; PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904 40 c3fbtB_ not modelled 14.8 17 PDB header:oxidoreductase, lyase Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase PDBTitle: crystal structure of a chorismate mutase/shikimate 5-2 dehydrogenase fusion protein from clostridium3 acetobutylicum 41 c3bbnC_ not modelled 14.3 50 PDB header:ribosome Chain: C: PDB Molecule:ribosomal protein s3; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 42 c1dipA_ not modelled 13.8 22 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 43 c3hzsA_ not modelled 12.5 11 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 44 d2bv3a3 not modelled 12.5 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 45 d1h8ba_ not modelled 11.9 13 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 46 d1nvta2 not modelled 11.7 13 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 47 c3m1eA_ not modelled 11.6 16 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of benm_dbd 48 d1vi2a2 not modelled 11.4 14 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 49 d1u5ta1 not modelled 11.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 50 c2fgyA_ not modelled 11.0 9 PDB header:lyase Chain: A: PDB Molecule:carboxysome shell polypeptide; PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca) 51 d1q3ma_ not modelled 10.5 23 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 52 c3bkhA_ not modelled 10.3 22 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 53 c2ev9B_ not modelled 9.9 29 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate 54 d2fug21 not modelled 9.9 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 55 d1q8ha_ not modelled 9.6 19 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 56 c1q8hA_ not modelled 9.6 19 PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin 57 d1m9dc_ not modelled 9.2 15 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 58 c3tozA_ not modelled 9.2 33 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. 59 d2b0ja1 not modelled 9.1 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HMD dimerization domain-like 60 c1nvtA_ not modelled 8.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ 61 d1npya2 not modelled 8.8 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 62 c2hk8B_ not modelled 8.3 13 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution 63 c3iz5U_ not modelled 8.1 19 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 64 d2qalc1 not modelled 8.0 38 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 65 d1p77a2 not modelled 7.5 14 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 66 c3pwzA_ not modelled 7.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida 67 d1pbya1 not modelled 7.2 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 68 d1nyta2 not modelled 6.8 15 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 69 c1p74B_ not modelled 6.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae 70 c1wjvA_ not modelled 6.7 44 PDB header:dna binding protein Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar 71 d1jmxa1 not modelled 6.6 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 72 c3izcU_ not modelled 6.6 26 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 73 c2zmeA_ not modelled 6.4 8 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 74 d2pxrc1 not modelled 6.3 15 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 75 c2eggA_ not modelled 6.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus 76 c1u5tA_ not modelled 6.3 16 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 77 d2nr7a1 not modelled 6.1 26 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:NMB1012-like 78 c1npyA_ not modelled 6.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607 79 c3u62A_ not modelled 6.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima 80 d2uubc1 not modelled 5.9 33 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 81 c3ff5B_ not modelled 5.9 35 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 82 c3no7A_ not modelled 5.9 16 PDB header:dna binding protein Chain: A: PDB Molecule:putative plasmid related protein; PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100 83 c3cuqA_ not modelled 5.9 9 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 84 c3a8yD_ not modelled 5.8 14 PDB header:hydrolase Chain: D: PDB Molecule:bag family molecular chaperone regulator 5; PDBTitle: crystal structure of the complex between the bag5 bd5 and2 hsp70 nbd 85 c2nloA_ not modelled 5.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum 86 d2oqoa1 not modelled 5.8 13 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 87 d2ga1a1 not modelled 5.7 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Alr1493-like 88 c1b9nA_ not modelled 5.7 17 PDB header:transcription Chain: A: PDB Molecule:protein (mode); PDBTitle: regulator from escherichia coli 89 c1lbuA_ not modelled 5.6 23 PDB header:hydrolase Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase; PDBTitle: hydrolase metallo (zn) dd-peptidase 90 d1g3pa2 not modelled 5.5 27 Fold:N-terminal domains of the minor coat protein g3p Superfamily:N-terminal domains of the minor coat protein g3p Family:N-terminal domains of the minor coat protein g3p 91 d2olua1 not modelled 5.2 11 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 92 c3nojA_ not modelled 5.2 13 PDB header:lyase Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida 93 d2d28c1 not modelled 5.1 20 Fold:Alpha-lytic protease prodomain-like Superfamily:EspE N-terminal domain-like Family:GSPII protein E N-terminal domain-like 94 d1k6ya1 not modelled 5.1 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase 95 d1wjfa_ not modelled 5.1 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0