13/01/2012 05:30:20 : INFO  : Run start: Fri Jan 13 05:30:20 GMT 2012
13/01/2012 05:30:24 : INFO  : Initialised job
13/01/2012 05:30:25 : INFO  : Renaming log file 'phyre2_20120113_053019.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/86c06610d2097c58/phyre_20120113_053019.log'
13/01/2012 05:30:26 : INFO  : Initialised job:
Sequence
>batch____
MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM
ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE
LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVE
FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN
TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL
LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ
LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG
HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESEQ

13/01/2012 05:30:26 : INFO  : Checked sequence
13/01/2012 05:30:28 : INFO  : Finding homologues with PSI-BLAST
13/01/2012 05:30:29 : INFO  : PSI-BLAST 3 iterations
13/01/2012 05:32:40 : INFO  : PSI-BLAST 5 iterations
13/01/2012 05:34:49 : INFO  : Finished PSI-BLAST
13/01/2012 05:34:51 : INFO  : Running Buildali to generate a3m file
13/01/2012 05:44:05 : INFO  : Converting to HMM
13/01/2012 05:44:10 : INFO  : Calibrating HMM
13/01/2012 05:44:31 : INFO  : Searching HMM database
13/01/2012 05:55:50 : INFO  : Finished buildali
13/01/2012 05:55:50 : INFO  : Predicting secondary structure
13/01/2012 05:55:54 : INFO  : Predicted secondary structure (PSI-Pred)
13/01/2012 05:55:54 : INFO  : Predicting Disordered regions
13/01/2012 05:55:58 : INFO  : Predicted Disorder (Disopred)
13/01/2012 05:55:58 : INFO  : Running memsat_svm check
13/01/2012 05:56:28 : INFO  : Globular protein
13/01/2012 05:56:28 : INFO  : Predicted Transmembrane (memsat_svm) ID '86c06610d2097c58'
13/01/2012 05:56:29 : INFO  : Initialising fold library search
13/01/2012 05:56:30 : INFO  : Initialised search input
13/01/2012 05:56:31 : INFO  : Building Ensemble models
13/01/2012 05:56:33 : INFO  : Building hh.d1jswa_.model.1.pdb
13/01/2012 05:56:41 : INFO  : Building hh.d1jswc_.model.2.pdb
13/01/2012 05:56:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/86c06610d2097c58/hh.d1jswc_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/86c06610d2097c58/d1jswc_.10.pdb
13/01/2012 05:56:48 : INFO  : Building d1jswa_.1.pdb
13/01/2012 05:56:54 : INFO  : Building d1j3ua_.2.pdb
13/01/2012 05:57:00 : INFO  : Building d1vdka_.3.pdb
13/01/2012 05:57:07 : INFO  : Building c1yfmA_.4.pdb
13/01/2012 05:57:13 : INFO  : Building d1yfma_.5.pdb
13/01/2012 05:57:19 : INFO  : Building d1fuoa_.6.pdb
13/01/2012 05:57:27 : INFO  : Building c3no9C_.7.pdb
13/01/2012 05:57:34 : INFO  : Building c3ocfB_.8.pdb
13/01/2012 05:57:42 : INFO  : Building c3e04C_.9.pdb
13/01/2012 05:57:48 : INFO  : Building d1jswc_.10.pdb
13/01/2012 05:57:55 : INFO  : Building c3gtdB_.11.pdb
13/01/2012 05:58:01 : INFO  : Building c3r6yG_.12.pdb
13/01/2012 05:58:08 : INFO  : Building c2pfmA_.13.pdb
13/01/2012 05:58:17 : INFO  : Building d1re5a_.14.pdb
13/01/2012 05:58:23 : INFO  : Building d1c3ca_.15.pdb
13/01/2012 05:58:31 : INFO  : Building d1q5na_.16.pdb
13/01/2012 05:58:38 : INFO  : Building d1tj7a_.17.pdb
13/01/2012 05:58:44 : INFO  : Building c2e9fC_.18.pdb
13/01/2012 05:58:52 : INFO  : Building d1i0aa_.19.pdb
13/01/2012 05:58:58 : INFO  : Building d1hy0a_.20.pdb
13/01/2012 05:59:23 : INFO  : Finished HH model building
13/01/2012 05:59:24 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
13/01/2012 06:00:05 : INFO  : html domain output complete ID '86c06610d2097c58'
13/01/2012 08:40:44 : INFO  : Run end  : Fri Jan 13 08:40:44 GMT 2012
