Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	A	P	I	R	A	R	K	R	V	R	K	Q	V	S	D	G	V	A	H	I	H	A	S	F	N	N	T	I	V	T	I	T	D	R	Q	G	N	A	L	G	W	A	T	A	G	G	S	G	F	R	G	S	R	K	S	T	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?																																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	A	A	Q	V	A	A	E	R	C	A	D	A	V	K	E	Y	G	I	K	N	L	E	V	M	V	K	G	P	G	P	G	R	E	S	T	I	R	A	L	N	A	A	G	F	R	I	T	N	I	T	D	V	T	P	I	P	H	N	G
Secondary structure
SS confidence
Disorder																																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		C	R	P	P	K	K	R	R	V
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qal chain K domain 1 Region: 13 - 129 Aligned: 117 Modelled: 117 Confidence: 100.0% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 2uub chain K domain 1 Region: 13 - 128 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 54% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 3bbn chain K Region: 14 - 129 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 54% PDB header:ribosome Chain: K: PDB Molecule:ribosomal protein s11; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2zkq chain K Region: 13 - 128 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 43% PDB header:ribosomal protein/rna Chain: K: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 3jyv chain K Region: 13 - 128 Aligned: 116 Modelled: 116 Confidence: 100.0% Identity: 41% PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s14(a); PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution Phyre2 PDB 1vqo chain N domain 1 Region: 17 - 124 Aligned: 99 Modelled: 108 Confidence: 97.4% Identity: 19% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 2gyc chain M domain 1 Region: 21 - 105 Aligned: 85 Modelled: 85 Confidence: 96.8% Identity: 21% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 2jl8 chain S Region: 5 - 84 Aligned: 76 Modelled: 80 Confidence: 96.7% Identity: 20% PDB header:ribosome Chain: S: PDB Molecule:50s ribosomal protein l18; PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit. Phyre2 PDB 1ovy chain A Region: 21 - 82 Aligned: 62 Modelled: 62 Confidence: 96.5% Identity: 23% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 3bbo chain Q Region: 3 - 106 Aligned: 104 Modelled: 104 Confidence: 96.3% Identity: 22% PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein l18; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2j01 chain S domain 1 Region: 21 - 82 Aligned: 59 Modelled: 62 Confidence: 96.2% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 2zjr chain L domain 1 Region: 3 - 97 Aligned: 91 Modelled: 95 Confidence: 95.2% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Translational machinery components Family: Ribosomal protein L18 and S11 Phyre2 PDB 1bgv chain A domain 1 Region: 51 - 114 Aligned: 63 Modelled: 64 Confidence: 74.9% Identity: 13% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Aminoacid dehydrogenase-like, C-terminal domain Phyre2 PDB 4a1a chain M Region: 17 - 124 Aligned: 99 Modelled: 108 Confidence: 73.9% Identity: 21% PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 2zkr chain N Region: 17 - 124 Aligned: 99 Modelled: 108 Confidence: 68.8% Identity: 20% PDB header:ribosomal protein/rna Chain: N: PDB Molecule:rna expansion segment es27; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1v9l chain A domain 1 Region: 51 - 119 Aligned: 68 Modelled: 69 Confidence: 66.7% Identity: 22% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Aminoacid dehydrogenase-like, C-terminal domain Phyre2 PDB 3izc chain Q Region: 10 - 124 Aligned: 106 Modelled: 115 Confidence: 65.6% Identity: 18% PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 1v9l chain A Region: 51 - 114 Aligned: 63 Modelled: 64 Confidence: 60.5% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad Phyre2 PDB 2yfq chain A Region: 51 - 121 Aligned: 70 Modelled: 71 Confidence: 57.3% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus Phyre2 PDB 2bma chain A Region: 51 - 114 Aligned: 63 Modelled: 64 Confidence: 56.7% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs Phyre2 1 d2qalk1 2 d2uubk1 3 c3bbnK_ 4 c2zkqk_ 5 c3jyvK_ 6 d1vqon1 7 d2gycm1 8 c2jl8S_ 9 d1ovya_ 10 c3bboQ_ 11 d2j01s1 12 d2zjrl1 13 d1bgva1 14 c4a1aM_ 15 c2zkrn_ 16 d1v9la1 17 c3izcQ_ 18 c1v9lA_ 19 c2yfqA_ 20 c2bmaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2qalk1 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 2 d2uubk1 100.0 54 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 3 c3bbnK_ 100.0 54 PDB header:ribosome Chain: K: PDB Molecule:ribosomal protein s11; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 4 c2zkqk_ 100.0 43 PDB header:ribosomal protein/rna Chain: K: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 5 c3jyvK_ 100.0 41 PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s14(a); PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 6 d1vqon1 97.4 19 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 7 d2gycm1 96.8 21 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 8 c2jl8S_ 96.7 20 PDB header:ribosome Chain: S: PDB Molecule:50s ribosomal protein l18; PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit. 9 d1ovya_ 96.5 23 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 10 c3bboQ_ 96.3 22 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein l18; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 11 d2j01s1 96.2 20 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 12 d2zjrl1 95.2 22 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 13 d1bgva1 74.9 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 14 c4a1aM_ 73.9 21 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 15 c2zkrn_ 68.8 20 PDB header:ribosomal protein/rna Chain: N: PDB Molecule:rna expansion segment es27; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 d1v9la1 66.7 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 17 c3izcQ_ 65.6 18 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 18 c1v9lA_ 60.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad 19 c2yfqA_ 57.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus 20 c2bmaA_ 56.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs 21 d1euza1 not modelled 56.2 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 22 d1gado1 not modelled 51.0 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 23 c3aogA_ not modelled 49.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form) 24 d1gtma1 not modelled 49.2 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 25 d1bvua1 not modelled 49.1 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 26 c3aoeC_ not modelled 47.8 17 PDB header:oxidoreductase Chain: C: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form) 27 c2jvfA_ not modelled 47.4 26 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 28 d1b26a1 not modelled 46.8 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 29 c1qysA_ not modelled 46.2 23 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 30 d1u8fo1 not modelled 45.6 34 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 31 d3cmco1 not modelled 45.0 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 32 d1hwxa1 not modelled 44.4 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 33 c1hrdA_ not modelled 43.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: glutamate dehydrogenase 34 d1j0xo1 not modelled 39.5 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 35 d1cf2o1 not modelled 38.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 36 d3gpdg1 not modelled 33.2 34 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 37 c2yyyB_ not modelled 28.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase 38 c1bvuF_ not modelled 28.0 16 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis 39 d2czca2 not modelled 27.0 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 40 c3kljA_ not modelled 27.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum 41 d2g82a1 not modelled 26.9 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 42 c2tmgD_ not modelled 24.7 21 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e 43 d1vc2a1 not modelled 23.8 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 44 d1ueha_ not modelled 23.7 17 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 45 c3iz5Q_ not modelled 23.7 21 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 46 d2b4ro1 not modelled 23.0 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 47 d2pkqo1 not modelled 21.0 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 48 c2yh5A_ not modelled 21.0 20 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 49 c3hq4R_ not modelled 20.6 26 PDB header:oxidoreductase Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution 50 d2g3qa1 not modelled 20.5 29 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c3k8zD_ not modelled 19.4 24 PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis 52 c2czcD_ not modelled 18.9 23 PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3 53 c3ga9S_ not modelled 17.6 26 PDB header:hydrolase Chain: S: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii 54 d1hpla2 not modelled 17.6 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 55 c2v36D_ not modelled 16.9 35 PDB header:transferase Chain: D: PDB Molecule:gamma-glutamyltranspeptidase small chain; PDBTitle: crystal structure of gamma-glutamyl transferase from2 bacillus subtilis 56 c2ep7B_ not modelled 16.6 26 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5 57 c1s7cA_ not modelled 16.6 26 PDB header:structural genomics, oxidoreductase Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a; PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli 58 c2e0yB_ not modelled 16.2 26 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli 59 c1gv4A_ not modelled 15.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) 60 d1etha2 not modelled 12.7 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 61 c3h9eA_ not modelled 12.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule: PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate 62 c1cf2Q_ not modelled 12.0 15 PDB header:oxidoreductase Chain: Q: PDB Molecule:protein (glyceraldehyde-3-phosphate PDBTitle: three-dimensional structure of d-glyceraldehyde-3-phosphate2 dehydrogenase from the hyperthermophilic archaeon3 methanothermus fervidus 63 c1jp3A_ not modelled 11.8 17 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 64 c1cerC_ not modelled 11.7 26 PDB header:oxidoreductase (aldehyde(d)-nad(a)) Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution 65 c1b7gO_ not modelled 11.6 18 PDB header:oxidoreductase Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase); PDBTitle: glyceraldehyde 3-phosphate dehydrogenase 66 c3hjaB_ not modelled 11.4 21 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi 67 c2b4rQ_ not modelled 10.5 20 PDB header:oxidoreductase Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site 68 d1jlxa2 not modelled 10.3 27 Fold:beta-Trefoil Superfamily:Agglutinin Family:Agglutinin 69 c2gd1P_ not modelled 10.2 26 PDB header:oxidoreductase(aldehyde(d)-nad(a)) Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus 70 d1jlxa1 not modelled 10.2 36 Fold:beta-Trefoil Superfamily:Agglutinin Family:Agglutinin 71 c1nr1A_ not modelled 9.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase 1; PDBTitle: crystal structure of the r463a mutant of human glutamate2 dehydrogenase 72 c1hplB_ not modelled 9.3 12 PDB header:hydrolase(carboxylic esterase) Chain: B: PDB Molecule:lipase; PDBTitle: horse pancreatic lipase. the crystal structure at 2.32 angstroms resolution 73 c2nqoB_ not modelled 8.5 26 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 74 d1t57a_ not modelled 8.5 24 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 75 c2j3eA_ not modelled 8.3 24 PDB header:protein transport Chain: A: PDB Molecule:t7i23.11 protein; PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159 76 d1gpla2 not modelled 7.6 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 77 d1v95a_ not modelled 7.4 13 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 78 d1lpbb2 not modelled 7.2 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 79 c3kwsB_ not modelled 6.8 16 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 80 d1g8ma1 not modelled 6.8 24 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 81 c2hcuA_ not modelled 6.8 38 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans 82 c3sthA_ not modelled 6.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii 83 c3q3wB_ not modelled 6.7 38 PDB header:transferase Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni. 84 c1gplA_ not modelled 6.6 12 PDB header:serine esterase Chain: A: PDB Molecule:rp2 lipase; PDBTitle: rp2 lipase 85 c2pvsB_ not modelled 6.5 17 PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q 86 c3h5jA_ not modelled 6.3 43 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis 87 c2e0wA_ not modelled 6.2 26 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli 88 d1htwa_ not modelled 6.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:YjeE-like 89 d1v7la_ not modelled 5.9 43 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 90 d1bu8a2 not modelled 5.7 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 91 c3efhB_ not modelled 5.7 17 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 92 d1pkxa1 not modelled 5.7 21 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 93 c2p9wA_ not modelled 5.5 15 PDB header:allergen Chain: A: PDB Molecule:mal s 1 allergenic protein; PDBTitle: crystal structure of the major malassezia sympodialis allergen mala s2 1 94 d2cyga1 not modelled 5.5 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 95 d2dsta1 not modelled 5.2 20 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:TTHA1544-like 96 c3b4nB_ not modelled 5.2 19 PDB header:lyase Chain: B: PDB Molecule:endo-pectate lyase; PDBTitle: crystal structure analysis of pectate lyase peli from2 erwinia chrysanthemi

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0