PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3k8zD_

Fold library id	PDB Header	Molecule	Title
c3k8zD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: nad-specific glutamate dehydrogenase;	PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis

Links to external resources
Added to library: Sat Aug 28 19:38:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V L K S T Q T V I H K A L E K L G Y P E E V Y E L L K E P M R L L T V K I P V R M D D G S V K I F T G Y R A H N D S V G P T K G G I R F H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T S
S
T T S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N V T E K E V K A L S I W M S L K C G I I D L P Y G G G K G G I V C D P R D M S F R E L E R L S R G Y V R A I S Q I V G P T K D V P A P D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
S
G G G S
G G G
B T T T
B
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F T N S Q I M A W M M D E Y S R I D E F N S P G F I T G K P L V L G G S H G R E S A T A K G V T I C I K E A A K K R G I D I K G A R V V V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S
G G G S S S
G G G T
S
T T T T
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G F G N A G S Y L A K F M H D A G A K V V G I S D A Y G G L Y D P E G L D I D C D I L V P A A I E N Q I T E E N A H N I R A K I V V E A A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S S
T T
S
S
S B
T T T G G G
S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G P T T L E G T K I L S D R D I L L V P D V L A S A G G V T V S Y F E W V Q N N Q G F Y W S E E E V E E K L E K M M V K S F N N I Y E M A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
T T
T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . .

Sequence N R R I D M R L A A Y M V G V R K M A E A S R F R G W I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	L	K	S	T	Q	T	V	I	H	K	A	L	E	K	L	G	Y	P	E	E	V	Y	E	L	L	K	E	P	M	R	L	L	T	V	K	I	P	V	R	M	D	D	G	S	V	K	I	F	T	G	Y	R	A	H	N	D	S	V	G	P	T	K	G	G	I	R	F	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T										T	S		S												T	T	S															S	S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	V	T	E	K	E	V	K	A	L	S	I	W	M	S	L	K	C	G	I	I	D	L	P	Y	G	G	G	K	G	G	I	V	C	D	P	R	D	M	S	F	R	E	L	E	R	L	S	R	G	Y	V	R	A	I	S	Q	I	V	G	P	T	K	D	V	P	A	P	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																					T		S												G	G	G	S																	G	G	G		B	T	T	T					B		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	T	N	S	Q	I	M	A	W	M	M	D	E	Y	S	R	I	D	E	F	N	S	P	G	F	I	T	G	K	P	L	V	L	G	G	S	H	G	R	E	S	A	T	A	K	G	V	T	I	C	I	K	E	A	A	K	K	R	G	I	D	I	K	G	A	R	V	V	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																		T	S			G	G	G	S	S	S			G	G	G	T			S			T	T																	T	T			G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	F	G	N	A	G	S	Y	L	A	K	F	M	H	D	A	G	A	K	V	V	G	I	S	D	A	Y	G	G	L	Y	D	P	E	G	L	D	I	D	C	D	I	L	V	P	A	A	I	E	N	Q	I	T	E	E	N	A	H	N	I	R	A	K	I	V	V	E	A	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S												T	T									S	S						T	T													S		S		S	B		T	T	T	G	G	G				S						S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	P	T	T	L	E	G	T	K	I	L	S	D	R	D	I	L	L	V	P	D	V	L	A	S	A	G	G	V	T	V	S	Y	F	E	W	V	Q	N	N	Q	G	F	Y	W	S	E	E	E	V	E	E	K	L	E	K	M	M	V	K	S	F	N	N	I	Y	E	M	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		B											T	T										T	T																T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Sequence	N	R	R	I	D	M	R	L	A	A	Y	M	V	G	V	R	K	M	A	E	A	S	R	F	R	G	W	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																						T	T