PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2gd1P_

Fold library id	PDB Header	Molecule	Title
c2gd1P_	PDB header: oxidoreductase(aldehyde(d)-nad(a))	Chain: P: PDB Molecule: apo-d-glyceraldehyde-3-phosphate dehydrogenase;	PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus

Links to external resources
Added to library: Tue Mar 16 14:22:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V K V G I N G F G R I G R N V F R A A L K N P D I E V V A V N D L T D A N T L A H L L K Y D S V H G R L D A E V S V N G N N L V V N G K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T
S S
T T T
S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I I V K A E R D P E N L A W G E I G V D I V V E S T G R F T K R E D A A K H L E A G A K K V I I S A P A K N E D I T I V M G V N Q D K Y D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G
T
S S S
B T T T
S S S
B S
S
T T T S G G G
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K A H H V I S N A S C T T N C L A P F A K V L H E Q F G I V R G M M T T V H S Y T N D Q R I L D L P H K D L R R A R A A A E S I I P T T T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S B S S S
S S S S T T S B T T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A A K A V A L V L P E L K G K L N G M A M R V P T P N V S V V D L V A E L E K E V T V E E V N A A L K A A A E G E L K G I L A Y S E E P L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T T T S G G G T T T S
S S
S S
T T T B T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . .

Sequence S R D Y N G S T V S S T I D A L S T M V I D G K M V K V V S W Y D N E T G Y S H R V V D L A A Y I A S K G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G T T
S S G G G
T T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	K	V	G	I	N	G	F	G	R	I	G	R	N	V	F	R	A	A	L	K	N	P	D	I	E	V	V	A	V	N	D	L	T	D	A	N	T	L	A	H	L	L	K	Y	D	S	V	H	G	R	L	D	A	E	V	S	V	N	G	N	N	L	V	V	N	G	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S											T	T		T	T									S	S													T	T	T				S	S						T	T					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	I	V	K	A	E	R	D	P	E	N	L	A	W	G	E	I	G	V	D	I	V	V	E	S	T	G	R	F	T	K	R	E	D	A	A	K	H	L	E	A	G	A	K	K	V	I	I	S	A	P	A	K	N	E	D	I	T	I	V	M	G	V	N	Q	D	K	Y	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		G	G	G							T								S	S	S			B					T					T	T		S					S	S			B	S		S					T	T	T	S	G	G	G			T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	A	H	H	V	I	S	N	A	S	C	T	T	N	C	L	A	P	F	A	K	V	L	H	E	Q	F	G	I	V	R	G	M	M	T	T	V	H	S	Y	T	N	D	Q	R	I	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	E	S	I	I	P	T	T	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																																								T	T	S	B	S	S	S				S	S	S	S	T	T	S	B	T	T	T	S							S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	A	K	A	V	A	L	V	L	P	E	L	K	G	K	L	N	G	M	A	M	R	V	P	T	P	N	V	S	V	V	D	L	V	A	E	L	E	K	E	V	T	V	E	E	V	N	A	A	L	K	A	A	A	E	G	E	L	K	G	I	L	A	Y	S	E	E	P	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	G	G	G	T	T	T	S	G	G	G	T	T	T									S		S	S											S	S																	T	T	T	B	T	T						S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Sequence	S	R	D	Y	N	G	S	T	V	S	S	T	I	D	A	L	S	T	M	V	I	D	G	K	M	V	K	V	V	S	W	Y	D	N	E	T	G	Y	S	H	R	V	V	D	L	A	A	Y	I	A	S	K	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	T	T			S	S					G	G	G					T	T	T										T	T