Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	D	K	T	I	A	F	S	L	L	D	L	A	P	I	P	E	G	S	S	A	R	E	A	F	S	H	S	L	D	L	A	R	L	A	E	K	R	G	Y	H	R	Y	W	L	A	E	H	H	N	M	T	G	I	A	S	A	A	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?	?																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	L	I	G	Y	L	A	A	N	T	T	T	L	H	L	G	S	G	G	V	M	L	P	N	H	S	P	L	V	I	A	E	Q	F	G	T	L	N	T	L	Y	P	G	R	I	D	L	G	L	G	R	A	P	G	S	D	Q	R	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	M	A	L	R	R	H	M	S	G	D	I	D	N	F	P	R	D	V	A	E	L	V	D	W	F	D	A	R	D	P	N	P	H	V	R	P	V	P	G	Y	G	E	K	I	P	V	W	L	L	G	S	S	L	Y	S	A	Q	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	Q	L	G	L	P	F	A	F	A	S	H	F	A	P	D	M	L	F	Q	A	L	H	L	Y	R	S	N	F	K	P	S	A	R	L	E	K	P	Y	A	M	V	C	I	N	I	I	A	A	D	S	N	R	D	A	E	F	L	F	T
Secondary structure
SS confidence
Disorder																																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	M	Q	Q	A	F	V	K	L	R	R	G	E	T	G	Q	L	P	P	P	I	Q	N	M	D	Q	F	W	S	P	S	E	Q	Y	G	V	Q	Q	A	L	S	M	S	L	V	G	D	K	A	K	V	R	H	G	L	Q	S	I	L	R
Secondary structure
SS confidence
Disorder													?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Sequence		E	T	D	A	D	E	I	M	V	N	G	Q	I	F	D	H	Q	A	R	L	H	S	F	E	L	A	M	D	V	K	E	E	L	L	G
Secondary structure
SS confidence
Disorder																																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1luc chain A Region: 6 - 333 Aligned: 309 Modelled: 311 Confidence: 100.0% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 1luc chain B Region: 6 - 328 Aligned: 305 Modelled: 307 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 2wgk chain A Region: 6 - 333 Aligned: 326 Modelled: 328 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida Phyre2 PDB 2i7g chain A Region: 6 - 333 Aligned: 316 Modelled: 318 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens Phyre2 PDB 3rao chain B Region: 4 - 333 Aligned: 316 Modelled: 317 Confidence: 100.0% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. Phyre2 PDB 1tvl chain A Region: 3 - 333 Aligned: 313 Modelled: 325 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Phyre2 PDB 1tvl chain A Region: 3 - 333 Aligned: 313 Modelled: 325 Confidence: 100.0% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 3sdo chain B Region: 3 - 333 Aligned: 317 Modelled: 331 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei Phyre2 PDB 1ezw chain A Region: 5 - 333 Aligned: 311 Modelled: 327 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 1f07 chain A Region: 6 - 332 Aligned: 308 Modelled: 327 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 1z69 chain D Region: 6 - 332 Aligned: 308 Modelled: 327 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 Phyre2 PDB 1nqk chain A Region: 6 - 334 Aligned: 314 Modelled: 324 Confidence: 100.0% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 1rhc chain A Region: 26 - 333 Aligned: 299 Modelled: 308 Confidence: 100.0% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 3c8n chain B Region: 6 - 333 Aligned: 310 Modelled: 322 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis Phyre2 PDB 2b81 chain D Region: 2 - 333 Aligned: 284 Modelled: 291 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus Phyre2 PDB 3b9n chain B Region: 1 - 333 Aligned: 324 Modelled: 324 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Phyre2 PDB 1nfp chain A Region: 124 - 330 Aligned: 187 Modelled: 187 Confidence: 99.9% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1fvp chain A Region: 156 - 328 Aligned: 156 Modelled: 156 Confidence: 99.4% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1jpm chain A domain 1 Region: 285 - 332 Aligned: 47 Modelled: 48 Confidence: 85.4% Identity: 6% Fold: TIM beta/alpha-barrel Superfamily: Enolase C-terminal domain-like Family: D-glucarate dehydratase-like Phyre2 PDB 1jdf chain A domain 1 Region: 285 - 332 Aligned: 48 Modelled: 48 Confidence: 79.7% Identity: 6% Fold: TIM beta/alpha-barrel Superfamily: Enolase C-terminal domain-like Family: D-glucarate dehydratase-like Phyre2 1 d1luca_ 2 d1lucb_ 3 c2wgkA_ 4 c2i7gA_ 5 c3raoB_ 6 c1tvlA_ 7 d1tvla_ 8 c3sdoB_ 9 d1ezwa_ 10 d1f07a_ 11 c1z69D_ 12 d1nqka_ 13 d1rhca_ 14 c3c8nB_ 15 c2b81D_ 16 c3b9nB_ 17 d1nfpa_ 18 d1fvpa_ 19 d1jpma1 20 d1jdfa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1luca_ 100.0 19 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 2 d1lucb_ 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 3 c2wgkA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida 4 c2i7gA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens 5 c3raoB_ 100.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. 6 c1tvlA_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis 7 d1tvla_ 100.0 15 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 8 c3sdoB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 9 d1ezwa_ 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 10 d1f07a_ 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 11 c1z69D_ 100.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 12 d1nqka_ 100.0 15 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 13 d1rhca_ 100.0 13 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 14 c3c8nB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis 15 c2b81D_ 100.0 16 PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus 16 c3b9nB_ 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 17 d1nfpa_ 99.9 10 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 18 d1fvpa_ 99.4 11 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 19 d1jpma1 85.4 6 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 20 d1jdfa1 79.7 6 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 21 c3qy6A_ not modelled 77.6 27 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe; PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases 22 d1tzza1 not modelled 77.2 6 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 23 c3d0cB_ not modelled 76.5 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution 24 c1ypxA_ not modelled 75.0 6 PDB header:transferase Chain: A: PDB Molecule:putative vitamin-b12 independent methionine synthase family PDBTitle: crystal structure of the putative vitamin-b12 independent methionine2 synthase from listeria monocytogenes, northeast structural genomics3 target lmr13 25 d1o5ka_ not modelled 74.0 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 26 d1j93a_ not modelled 72.5 11 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 27 c3rpdB_ not modelled 71.9 19 PDB header:transferase Chain: B: PDB Molecule:methionine synthase (b12-independent); PDBTitle: the structure of a b12-independent methionine synthase from shewanella2 sp. w3-18-1 in complex with selenomethionine. 28 c3na8A_ not modelled 67.0 12 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 29 c3e96B_ not modelled 66.6 14 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 30 c2ehhE_ not modelled 66.6 8 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 31 d1r3sa_ not modelled 65.7 9 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 32 c1jpkA_ not modelled 64.7 9 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase 33 c2r8wB_ not modelled 64.0 19 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 34 d1u1ha2 not modelled 60.8 9 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Cobalamin-independent methionine synthase 35 d1bqga1 not modelled 60.7 4 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 36 c2yxgD_ not modelled 59.3 12 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 37 d1liua2 not modelled 58.6 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 38 c2infB_ not modelled 57.7 11 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 39 c3si9B_ not modelled 57.6 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 40 c2ejaB_ not modelled 57.3 11 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 41 d1jpdx1 not modelled 56.8 10 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 42 c3lerA_ not modelled 56.8 13 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 43 c3pueA_ not modelled 55.0 15 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 44 c3fkkA_ not modelled 55.0 8 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 45 c2a7nA_ not modelled 52.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase; PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase 46 d1a3xa2 not modelled 50.7 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 47 c2oztA_ not modelled 50.6 6 PDB header:lyase Chain: A: PDB Molecule:tlr1174 protein; PDBTitle: crystal structure of o-succinylbenzoate synthase from2 thermosynechococcus elongatus bp-1 48 c3cprB_ not modelled 50.0 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 49 c2vc6A_ not modelled 49.7 9 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound 50 c1jvnB_ not modelled 48.7 11 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 51 d2a6na1 not modelled 48.2 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 52 d2g50a2 not modelled 48.1 10 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 53 c3hkxA_ not modelled 47.9 13 PDB header:hydrolase Chain: A: PDB Molecule:amidase; PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp. 54 c3g0sA_ not modelled 47.9 11 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 55 d1xxxa1 not modelled 47.8 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 56 c3cyvA_ not modelled 47.6 9 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism 57 d1p4ca_ not modelled 46.8 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 58 d2gdqa1 not modelled 45.6 7 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 59 c2qddA_ not modelled 44.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism 60 c1zfjA_ not modelled 44.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 61 c3kwsB_ not modelled 44.5 27 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 62 c2v9dB_ not modelled 43.2 14 PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 63 c3eb2A_ not modelled 42.2 14 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 64 d1rvka1 not modelled 42.2 7 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 65 d2d69a1 not modelled 41.0 8 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 66 c2e28A_ not modelled 40.1 12 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus 67 d2noca1 not modelled 40.0 17 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 68 c3eoeC_ not modelled 39.8 10 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 69 c2nq5A_ not modelled 39.2 15 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: crystal structure of methyltransferase from streptococcus2 mutans 70 c3bi8A_ not modelled 38.8 13 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 71 c3e0vB_ not modelled 38.0 12 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 72 d1uoka2 not modelled 37.6 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 73 c3fluD_ not modelled 36.9 11 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 74 c3n2xB_ not modelled 36.9 16 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 75 c2wjeA_ not modelled 36.8 14 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 76 c3msyC_ not modelled 36.5 2 PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium 77 c3ma8A_ not modelled 36.0 10 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum 78 c2vgbB_ not modelled 35.8 12 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase isozymes r/l; PDBTitle: human erythrocyte pyruvate kinase 79 c1a3wB_ not modelled 35.2 13 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+ 80 c1u22A_ not modelled 34.8 9 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: a. thaliana cobalamine independent methionine synthase 81 c1pklB_ not modelled 33.7 12 PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase 82 c3noeA_ not modelled 33.7 9 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 83 d1pkla2 not modelled 33.4 12 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 84 c3lciA_ not modelled 31.8 15 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 85 c1t5aB_ not modelled 30.8 10 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 86 c2d69B_ not modelled 30.7 8 PDB header:lyase Chain: B: PDB Molecule:ribulose bisphosphate carboxylase; PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal) 87 c2qgyA_ not modelled 30.3 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:enolase from the environmental genome shotgun PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea 88 d1pv8a_ not modelled 30.2 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 89 c2rfgB_ not modelled 30.0 9 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 90 c2rdxG_ not modelled 29.7 13 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism 91 c1t7lA_ not modelled 29.5 15 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: crystal structure of cobalamin-independent methionine2 synthase from t. maritima 92 d1f74a_ not modelled 29.5 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 93 c3my9A_ not modelled 29.0 11 PDB header:isomerase Chain: A: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of a muconate cycloisomerase from azorhizobium2 caulinodans 94 d1m53a2 not modelled 28.6 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 95 c3dcpB_ not modelled 28.5 16 PDB header:hydrolase Chain: B: PDB Molecule:histidinol-phosphatase; PDBTitle: crystal structure of the putative histidinol phosphatase2 hisk from listeria monocytogenes. northeast structural3 genomics consortium target lmr141. 96 c3k1dA_ not modelled 28.5 4 PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv 97 c3cnyA_ not modelled 28.4 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 98 c2gdqB_ not modelled 27.4 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yitf; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution 99 c1bf2A_ not modelled 27.4 12 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 100 c2r94B_ not modelled 27.1 14 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 101 d1x7fa2 not modelled 27.0 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Outer surface protein, N-terminal domain 102 d1xkya1 not modelled 26.7 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 103 c2yb1A_ not modelled 26.1 21 PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase; PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate. 104 d1uf5a_ not modelled 26.0 18 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 105 c3e0fA_ not modelled 26.0 33 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphoesterase; PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution 106 c1m7xC_ not modelled 25.8 4 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 107 d1oyaa_ not modelled 25.0 7 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 108 c2qdeA_ not modelled 24.5 13 PDB header:lyase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1 109 c2gq8A_ not modelled 23.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, fmn-binding; PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone 110 c3daqB_ not modelled 23.5 20 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 111 c1aqfB_ not modelled 23.3 10 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate 112 c3ucqA_ not modelled 23.2 15 PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis 113 c3ik4A_ not modelled 23.0 17 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus 114 c2ze0A_ not modelled 22.8 22 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase gsj 115 d1cgta4 not modelled 22.8 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 116 c3h5dD_ not modelled 22.7 11 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from drug-resistant streptococcus2 pneumoniae 117 d1w3ia_ not modelled 22.6 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 118 d1hl2a_ not modelled 22.5 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 119 d1ykwa1 not modelled 22.3 5 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 120 d1q45a_ not modelled 21.9 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0