Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	S	A	F	Q	L	E	N	N	R	L	T	R	L	E	V	E	E	S	Q	P	L	V	N	A	V	W	I	D	L	V	E	P	D	D	D	E	R	L	R	V	Q	S	E	L	G	Q	S	L	A	T	R	P	E	L	E	D	I	E
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	S	A	R	F	F	E	D	D	D	G	L	H	I	H	S	F	F	F	F	E	D	A	E	D	H	A	G	N	S	T	V	A	F	T	I	R	D	G	R	L	F	T	L	R	E	R	E	L	P	A	F	R	L	Y	R	M	R	A	R
Secondary structure
SS confidence
Disorder																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	Q	S	M	V	D	G	N	A	Y	E	L	L	L	D	L	F	E	T	K	I	E	Q	L	A	D	E	I	E	N	I	Y	S	D	L	E	Q	L	S	R	V	I	M	E	G	H	Q	G	D	E	Y	D	E	A	L	S	T	L	A	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																					?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	E	D	I	G	W	K	V	R	L	C	L	M	D	T	Q	R	A	L	N	F	L	V	R	K	A	R	L	P	G	G	Q	L	E	Q	A	R	E	I	L	R	D	I	E	S	L	L	P	H	N	E	S	L	F	Q	K	V	N	F	L
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	Q	A	A	M	G	F	I	N	I	E	Q	N	R	I	I	K	I	F	S	V	V	S	V	V	F	L	P	P	T	L	V	A	S	S	Y	G	M	N	F	E	F	M	P	E	L	K	W	S	F	G	Y	P	G	A	I	I	F	M	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Sequence		L	A	G	L	A	P	Y	L	Y	F	K	R	K	N	W	L
Secondary structure
SS confidence
Disorder														?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bbj chain B Region: 2 - 314 Aligned: 302 Modelled: 313 Confidence: 100.0% Identity: 17% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 2iub chain A domain 1 Region: 2 - 250 Aligned: 245 Modelled: 249 Confidence: 100.0% Identity: 13% Fold: CorA soluble domain-like Superfamily: CorA soluble domain-like Family: CorA soluble domain-like Phyre2 PDB 3nwi chain C Region: 1 - 249 Aligned: 230 Modelled: 249 Confidence: 100.0% Identity: 13% PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system Phyre2 PDB 2hn1 chain A Region: 2 - 228 Aligned: 220 Modelled: 227 Confidence: 100.0% Identity: 15% PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ Phyre2 PDB 3ck6 chain E Region: 2 - 251 Aligned: 237 Modelled: 239 Confidence: 100.0% Identity: 13% PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 Phyre2 PDB 2bbh chain A domain 1 Region: 2 - 206 Aligned: 193 Modelled: 205 Confidence: 100.0% Identity: 13% Fold: CorA soluble domain-like Superfamily: CorA soluble domain-like Family: CorA soluble domain-like Phyre2 PDB 2iub chain A domain 2 Region: 251 - 314 Aligned: 50 Modelled: 50 Confidence: 99.5% Identity: 26% Fold: Transmembrane helix hairpin Superfamily: Magnesium transport protein CorA, transmembrane region Family: Magnesium transport protein CorA, transmembrane region Phyre2 PDB 3cx5 chain D domain 2 Region: 284 - 315 Aligned: 32 Modelled: 32 Confidence: 55.8% Identity: 13% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 1ppj chain D domain 2 Region: 284 - 315 Aligned: 32 Modelled: 32 Confidence: 54.8% Identity: 22% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 3j01 chain A Region: 249 - 310 Aligned: 62 Modelled: 62 Confidence: 28.4% Identity: 8% PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment Phyre2 PDB 1oy8 chain A Region: 260 - 310 Aligned: 51 Modelled: 51 Confidence: 28.4% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump Phyre2 PDB 3rfu chain C Region: 254 - 315 Aligned: 60 Modelled: 62 Confidence: 27.2% Identity: 8% PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase Phyre2 PDB 1zrt chain D Region: 293 - 315 Aligned: 22 Modelled: 23 Confidence: 26.7% Identity: 23% PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound Phyre2 PDB 3dl8 chain H Region: 250 - 310 Aligned: 61 Modelled: 61 Confidence: 25.6% Identity: 8% PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Phyre2 PDB 1qcr chain D Region: 284 - 315 Aligned: 32 Modelled: 32 Confidence: 23.3% Identity: 22% PDB header: PDB COMPND: Phyre2 PDB 3mku chain A Region: 243 - 315 Aligned: 73 Modelled: 73 Confidence: 21.3% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Phyre2 PDB 3r1f chain O Region: 33 - 55 Aligned: 23 Modelled: 23 Confidence: 19.7% Identity: 9% PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis Phyre2 PDB 2aki chain Y Region: 251 - 310 Aligned: 60 Modelled: 60 Confidence: 19.6% Identity: 8% PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli Phyre2 PDB 1xub chain A domain 1 Region: 1 - 68 Aligned: 63 Modelled: 68 Confidence: 19.3% Identity: 14% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1p84 chain D Region: 284 - 315 Aligned: 32 Modelled: 32 Confidence: 18.9% Identity: 13% PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 1 c2bbjB_ 2 d2iuba1 3 c3nwiC_ 4 c2hn1A_ 5 c3ck6E_ 6 d2bbha1 7 d2iuba2 8 d3cx5d2 9 d1ppjd2 10 c3j01A_ 11 c1oy8A_ 12 c3rfuC_ 13 c1zrtD_ 14 c3dl8H_ 15 c1qcrD_ 16 c3mkuA_ 17 c3r1fO_ 18 c2akiY_ 19 d1xuba1 20 c1p84D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbjB_ 100.0 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 2 d2iuba1 100.0 13 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 3 c3nwiC_ 100.0 13 PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system 4 c2hn1A_ 100.0 15 PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ 5 c3ck6E_ 100.0 13 PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 6 d2bbha1 100.0 13 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 7 d2iuba2 99.5 26 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 8 d3cx5d2 55.8 13 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 9 d1ppjd2 54.8 22 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 10 c3j01A_ 28.4 8 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 11 c1oy8A_ 28.4 14 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 12 c3rfuC_ 27.2 8 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 13 c1zrtD_ 26.7 23 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 14 c3dl8H_ 25.6 8 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 15 c1qcrD_ 23.3 22 PDB header: PDB COMPND: 16 c3mkuA_ 21.3 16 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 17 c3r1fO_ 19.7 9 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 18 c2akiY_ 19.6 8 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 19 d1xuba1 19.3 14 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 20 c1p84D_ 18.9 13 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 d1lnga_ not modelled 18.4 10 Fold:SRP19 Superfamily:SRP19 Family:SRP19 22 c3cwbQ_ not modelled 17.2 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 23 c2yiuE_ not modelled 16.9 13 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 24 d1e3oc1 not modelled 16.5 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 25 d1o4xa1 not modelled 15.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 26 c3ktwA_ not modelled 15.3 13 PDB header:rna/rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: crystal structure of the srp19/s-domain srp rna complex of sulfolobus2 solfataricus 27 c2fynH_ not modelled 14.8 9 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 28 d1mh3a1 not modelled 14.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 c1s1iJ_ not modelled 14.6 38 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 30 d1x2na1 not modelled 14.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 c2ks1B_ not modelled 14.5 25 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 32 d1au7a1 not modelled 14.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 33 c2da1A_ not modelled 13.6 10 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 34 d1jida_ not modelled 13.5 18 Fold:SRP19 Superfamily:SRP19 Family:SRP19 35 d2r5yb1 not modelled 13.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 c2fz0A_ not modelled 12.9 14 PDB header:membrane protein Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein 37 d9anta_ not modelled 12.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 38 d1hx1b_ not modelled 12.8 14 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 39 d1du0a_ not modelled 12.6 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1k61a_ not modelled 12.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 d1wh5a_ not modelled 12.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 d1dzfa2 not modelled 11.8 13 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 43 d1uhsa_ not modelled 11.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1fjlb_ not modelled 11.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 d1z3ea1 not modelled 11.5 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 46 d1ig7a_ not modelled 11.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 47 c3nauA_ not modelled 11.4 29 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 48 d1le8a_ not modelled 11.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d1gjja2 not modelled 11.3 19 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 50 c4a1cD_ not modelled 11.2 43 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 51 c2vi6F_ not modelled 11.2 14 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 52 d2p81a1 not modelled 11.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 53 d1du6a_ not modelled 11.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 54 c2oszA_ not modelled 11.0 9 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 55 d1s7ea1 not modelled 10.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 56 d2craa1 not modelled 10.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 57 c3a03A_ not modelled 10.9 19 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 58 d2cuea1 not modelled 10.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 c3ednB_ not modelled 10.7 16 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family 60 c3ci9B_ not modelled 10.7 27 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 61 c2pmzV_ not modelled 10.7 26 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 62 d1eika_ not modelled 10.6 23 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 63 d1hdpa_ not modelled 10.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 d2hddb_ not modelled 10.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 d1iwga8 not modelled 10.1 7 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 66 c2dn0A_ not modelled 10.0 17 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3 67 d1f43a_ not modelled 9.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 68 c2da2A_ not modelled 9.9 24 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 69 c3l09B_ not modelled 9.6 18 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 70 d1bw5a_ not modelled 9.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 d1qusa_ not modelled 9.3 27 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 72 d1b72a_ not modelled 9.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 73 d1p7jb_ not modelled 9.1 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d1jgga_ not modelled 9.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 d1p7ia_ not modelled 9.0 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 76 c2e19A_ not modelled 8.9 13 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 77 d1x2ma1 not modelled 8.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 c3narA_ not modelled 8.6 19 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1; PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4) 79 c2da4A_ not modelled 8.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 80 d1hmja_ not modelled 8.5 6 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 81 d1ftta_ not modelled 8.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 82 c3l78A_ not modelled 8.4 13 PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 83 d2cqxa1 not modelled 8.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 84 d1sana_ not modelled 8.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 c3dluA_ not modelled 8.2 25 PDB header:rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 86 d1akha_ not modelled 8.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 d1fjla_ not modelled 8.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 88 c2yvxD_ not modelled 8.1 8 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 89 c2w9pC_ not modelled 8.1 6 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:multicystatin; PDBTitle: crystal structure of potato multicystatin 90 d1wi3a_ not modelled 8.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 91 d1jeia_ not modelled 8.0 10 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 92 d2e1oa1 not modelled 8.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 93 c1s7eA_ not modelled 7.8 24 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 94 d1gt0c1 not modelled 7.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c3ixzA_ not modelled 7.8 13 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 96 d1octc1 not modelled 7.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 d1b8ia_ not modelled 7.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 c2dmuA_ not modelled 7.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 99 d1yrnb_ not modelled 7.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0