Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	P	Q	V	Y	H	V	D	A	F	T	S	Q	P	F	R	G	N	S	A	G	V	V	F	P	A	D	N	L	S	E	A	Q	M	Q	L	I	A	R	E	L	G	H	S	E	T	A	F	L	L	H	S	D	D	S	D	V	R	I
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	Y	F	T	P	T	V	E	V	P	I	C	G	H	A	T	V	A	A	H	Y	V	R	A	K	V	L	G	L	G	N	C	T	I	W	Q	T	S	L	A	G	K	H	R	V	T	I	E	K	H	N	D	D	Y	R	I	S	L	E	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	T	P	G	F	E	P	P	L	E	G	E	T	R	A	A	I	I	N	A	L	H	L	T	E	D	D	I	L	P	G	L	P	I	Q	V	A	T	T	G	H	S	K	V	M	I	P	L	K	P	E	V	D	I	D	A	L	S	P	D
Secondary structure
SS confidence
Disorder					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	N	A	L	T	A	I	S	K	K	I	G	C	N	G	F	F	P	F	Q	I	R	P	G	K	N	E	T	D	G	R	M	F	S	P	A	I	G	I	V	E	D	P	V	T	G	N	A	N	G	P	M	G	A	W	L	V	H	H	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Sequence		V	L	P	H	D	G	N	V	L	R	V	K	G	H	Q	G	R	A	L	G	R	D	G	M	I	E	V	T	V	T	I	R	D	N	Q	P	E	K	V	T	I	S	G	T	A	V	I	L	F	H	A	E	W	A	I	E	L
Secondary structure
SS confidence
Disorder			?	?		?																											?																									?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qy9 chain B Region: 3 - 297 Aligned: 295 Modelled: 295 Confidence: 100.0% Identity: 98% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde Phyre2 PDB 3edn chain B Region: 2 - 295 Aligned: 291 Modelled: 294 Confidence: 100.0% Identity: 32% PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family Phyre2 PDB 1ym5 chain A Region: 1 - 295 Aligned: 282 Modelled: 295 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. Phyre2 PDB 1u1w chain A Region: 2 - 295 Aligned: 276 Modelled: 294 Confidence: 100.0% Identity: 30% PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 Phyre2 PDB 1u0k chain A Region: 1 - 294 Aligned: 279 Modelled: 288 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gene product pa4716; PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa Phyre2 PDB 1s7j chain A Region: 1 - 295 Aligned: 260 Modelled: 286 Confidence: 100.0% Identity: 31% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 3ekm chain E Region: 11 - 295 Aligned: 263 Modelled: 285 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap Phyre2 PDB 2otn chain B Region: 11 - 297 Aligned: 262 Modelled: 280 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis Phyre2 PDB 2gkj chain A Region: 11 - 295 Aligned: 260 Modelled: 285 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap Phyre2 PDB 2azp chain A Region: 1 - 296 Aligned: 280 Modelled: 295 Confidence: 100.0% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa1268; PDBTitle: crystal structure of pa1268 solved by sulfur sad Phyre2 PDB 1w62 chain B Region: 5 - 296 Aligned: 286 Modelled: 292 Confidence: 100.0% Identity: 13% PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) Phyre2 PDB 1qy9 chain A domain 1 Region: 3 - 129 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 99% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 3fve chain A Region: 11 - 293 Aligned: 244 Modelled: 263 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf Phyre2 PDB 1u0k chain A domain 1 Region: 3 - 127 Aligned: 125 Modelled: 125 Confidence: 100.0% Identity: 26% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1xub chain A domain 1 Region: 1 - 127 Aligned: 124 Modelled: 126 Confidence: 100.0% Identity: 33% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1qy9 chain A domain 2 Region: 132 - 297 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 98% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1tm0 chain A Region: 5 - 296 Aligned: 265 Modelled: 283 Confidence: 100.0% Identity: 14% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Proline racemase Phyre2 PDB 1xub chain A domain 2 Region: 135 - 295 Aligned: 148 Modelled: 155 Confidence: 100.0% Identity: 30% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1u0k chain A domain 2 Region: 135 - 293 Aligned: 144 Modelled: 159 Confidence: 99.9% Identity: 30% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 2gke chain A domain 1 Region: 11 - 132 Aligned: 118 Modelled: 122 Confidence: 99.9% Identity: 20% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Diaminopimelate epimerase Phyre2 1 c1qy9B_ 2 c3ednB_ 3 c1ym5A_ 4 c1u1wA_ 5 c1u0kA_ 6 d1s7ja_ 7 c3ekmE_ 8 c2otnB_ 9 c2gkjA_ 10 c2azpA_ 11 c1w62B_ 12 d1qy9a1 13 c3fveA_ 14 d1u0ka1 15 d1xuba1 16 d1qy9a2 17 d1tm0a_ 18 d1xuba2 19 d1u0ka2 20 d2gkea1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qy9B_ 100.0 98 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde 2 c3ednB_ 100.0 32 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family 3 c1ym5A_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. 4 c1u1wA_ 100.0 30 PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 5 c1u0kA_ 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gene product pa4716; PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa 6 d1s7ja_ 100.0 31 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 7 c3ekmE_ 100.0 16 PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap 8 c2otnB_ 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis 9 c2gkjA_ 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap 10 c2azpA_ 100.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa1268; PDBTitle: crystal structure of pa1268 solved by sulfur sad 11 c1w62B_ 100.0 13 PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) 12 d1qy9a1 100.0 99 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 13 c3fveA_ 100.0 16 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf 14 d1u0ka1 100.0 26 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 15 d1xuba1 100.0 33 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 16 d1qy9a2 100.0 98 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 17 d1tm0a_ 100.0 14 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Proline racemase 18 d1xuba2 100.0 30 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 19 d1u0ka2 99.9 30 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 20 d2gkea1 99.9 20 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 21 d2gkea2 not modelled 99.8 13 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 22 c3g7kD_ not modelled 98.2 16 PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase 23 c2pw0A_ not modelled 98.1 18 PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis 24 d2h9fa2 not modelled 96.0 23 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 25 c3ldgA_ not modelled 40.2 18 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein smu.472; PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah 26 c3k0bA_ not modelled 38.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 27 d1g60a_ not modelled 36.5 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 28 d1booa_ not modelled 33.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 29 c2zifB_ not modelled 32.7 23 PDB header:transferase Chain: B: PDB Molecule:putative modification methylase; PDBTitle: crystal structure of ttha0409, putative dna modification2 methylase from thermus thermophilus hb8- complexed with s-3 adenosyl-l-methionine 30 d1euza2 not modelled 31.7 26 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 31 d1bgva2 not modelled 31.5 19 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 32 d1v9la2 not modelled 31.0 19 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 33 c1nw6A_ not modelled 29.6 19 PDB header:transferase Chain: A: PDB Molecule:modification methylase rsri; PDBTitle: structure of the beta class n6-adenine dna methyltransferase rsri2 bound to sinefungin 34 d1o9ga_ not modelled 28.7 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase AviRa 35 d1gtma2 not modelled 26.6 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 36 d1eg2a_ not modelled 24.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 37 c3lduA_ not modelled 23.6 26 PDB header:transferase Chain: A: PDB Molecule:putative methylase; PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630. 38 d1bvua2 not modelled 23.4 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 39 d2ar0a1 not modelled 22.3 36 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 40 d2fug21 not modelled 21.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 41 d1b26a2 not modelled 21.7 26 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 42 c2waqG_ not modelled 20.6 27 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase rpo8 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 43 c3khkA_ not modelled 20.2 21 PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. 44 d1hwxa2 not modelled 19.3 29 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 45 d2okca1 not modelled 17.8 29 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 46 c2l3bA_ not modelled 17.4 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 47 d2f8la1 not modelled 17.2 36 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 48 c2l7qA_ not modelled 16.3 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 49 c3p9nA_ not modelled 16.1 21 PDB header:transferase Chain: A: PDB Molecule:possible methyltransferase (methylase); PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase 50 c1g38A_ not modelled 15.4 7 PDB header:transferase/dna Chain: A: PDB Molecule:modification methylase taqi; PDBTitle: adenine-specific methyltransferase m. taq i/dna complex 51 c3sb1B_ not modelled 15.4 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hydrogenase expression protein; PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259 52 c1aqjB_ not modelled 15.4 7 PDB header:methyltransferase Chain: B: PDB Molecule:adenine-n6-dna-methyltransferase taqi; PDBTitle: structure of adenine-n6-dna-methyltransferase taqi 53 d1uhsa_ not modelled 15.2 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 54 d2ih2a1 not modelled 14.0 7 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:DNA methylase TaqI, N-terminal domain 55 d1l1fa2 not modelled 14.0 29 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 56 c3lkdB_ not modelled 13.5 21 PDB header:transferase Chain: B: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of the type i restriction-modification2 system methyltransferase subunit from streptococcus3 thermophilus, northeast structural genomics consortium4 target sur80 57 d1s7ea1 not modelled 13.2 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 58 d1j6ua1 not modelled 13.1 12 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 59 d1ko7a1 not modelled 13.1 13 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 60 d2p81a1 not modelled 12.2 41 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 61 c3itcA_ not modelled 12.2 13 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 62 c3k8zD_ not modelled 11.8 19 PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis 63 d1pjza_ not modelled 11.7 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Thiopurine S-methyltransferase 64 c3c6vB_ not modelled 11.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130; PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus 65 c1v9lA_ not modelled 11.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad 66 d1e3oc1 not modelled 11.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 67 d1knxa1 not modelled 10.9 3 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 68 d1wy7a1 not modelled 10.8 33 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ta1320-like 69 c2i5gB_ not modelled 10.6 23 PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa 70 c1bvuF_ not modelled 10.4 23 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis 71 c2vi6F_ not modelled 10.3 41 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 72 c2da4A_ not modelled 10.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 73 c3lu2B_ not modelled 10.2 14 PDB header:hydrolase Chain: B: PDB Molecule:lmo2462 protein; PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase 74 d1o4xa1 not modelled 10.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 c3s1sA_ not modelled 10.0 29 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 76 d1p7ia_ not modelled 9.8 41 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 77 c2da2A_ not modelled 9.7 5 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 78 c2tmgD_ not modelled 9.5 26 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e 79 d1ne2a_ not modelled 9.4 36 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ta1320-like 80 d2hi3a1 not modelled 9.3 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 81 d1ws6a1 not modelled 9.3 29 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 82 c2da1A_ not modelled 9.2 29 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 83 d2ifta1 not modelled 9.0 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 84 c2yfqA_ not modelled 9.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus 85 c2l9rA_ not modelled 8.9 29 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 86 d2cqxa1 not modelled 8.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 c2ragB_ not modelled 8.8 27 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus 88 d2cuea1 not modelled 8.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 89 c3aogA_ not modelled 8.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form) 90 d1au7a1 not modelled 8.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 91 c2dmuA_ not modelled 8.5 15 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 92 d1jgga_ not modelled 8.5 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 93 d2j85a1 not modelled 8.5 20 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 94 c3fdgA_ not modelled 8.4 27 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19; PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19 95 d2hddb_ not modelled 8.1 41 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 96 d1f43a_ not modelled 8.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 d1le8a_ not modelled 8.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 d1ztra1 not modelled 7.9 41 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 99 c1ko7B_ not modelled 7.9 13 PDB header:transferase,hydrolase Chain: B: PDB Molecule:hpr kinase/phosphatase; PDBTitle: x-ray structure of the hpr kinase/phosphatase from2 staphylococcus xylosus at 1.95 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0