17/01/2012 02:57:12 : INFO  : Run start: Tue Jan 17 02:57:09 GMT 2012
17/01/2012 02:57:23 : INFO  : Initialised job
17/01/2012 02:57:28 : INFO  : Renaming log file 'phyre2_20120117_025708.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/846e28bc1a63b25d/phyre_20120117_025708.log'
17/01/2012 02:57:31 : INFO  : Initialised job:
Sequence
>batch____
MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRI
RYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQ
GTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPD
LNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHN
VLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL

17/01/2012 02:57:34 : INFO  : Checked sequence
17/01/2012 02:57:41 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 02:57:43 : INFO  : PSI-BLAST 3 iterations
17/01/2012 02:59:21 : INFO  : PSI-BLAST 5 iterations
17/01/2012 03:01:09 : INFO  : Finished PSI-BLAST
17/01/2012 03:01:14 : INFO  : Running Buildali to generate a3m file
17/01/2012 03:11:07 : INFO  : Converting to HMM
17/01/2012 03:11:14 : INFO  : Calibrating HMM
17/01/2012 03:11:35 : INFO  : Searching HMM database
17/01/2012 03:18:14 : INFO  : Finished buildali
17/01/2012 03:18:18 : INFO  : Predicting secondary structure
17/01/2012 03:18:36 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 03:18:40 : INFO  : Predicting Disordered regions
17/01/2012 03:18:49 : INFO  : Predicted Disorder (Disopred)
17/01/2012 03:18:53 : INFO  : Running memsat_svm check
17/01/2012 03:27:31 : INFO  : Globular protein
17/01/2012 03:27:34 : INFO  : Predicted Transmembrane (memsat_svm) ID '846e28bc1a63b25d'
17/01/2012 03:27:37 : INFO  : Initialising fold library search
17/01/2012 03:27:44 : INFO  : Initialised search input
17/01/2012 03:27:48 : INFO  : Building Ensemble models
17/01/2012 03:27:55 : INFO  : Building hh.c1qy9B_.model.1.pdb
17/01/2012 03:28:25 : INFO  : Building c1qy9B_.1.pdb
17/01/2012 03:28:53 : INFO  : Building c3ednB_.2.pdb
17/01/2012 03:29:24 : INFO  : Building c1ym5A_.3.pdb
17/01/2012 03:29:57 : INFO  : Building c1u1wA_.4.pdb
17/01/2012 03:30:28 : INFO  : Building c1u0kA_.5.pdb
17/01/2012 03:30:57 : INFO  : Building d1s7ja_.6.pdb
17/01/2012 03:31:27 : INFO  : Building c3ekmE_.7.pdb
17/01/2012 03:31:58 : INFO  : Building c2otnB_.8.pdb
17/01/2012 03:32:29 : INFO  : Building c2gkjA_.9.pdb
17/01/2012 03:32:57 : INFO  : Building c2azpA_.10.pdb
17/01/2012 03:33:28 : INFO  : Building c1w62B_.11.pdb
17/01/2012 03:33:58 : INFO  : Building d1qy9a1.12.pdb
17/01/2012 03:34:26 : INFO  : Building c3fveA_.13.pdb
17/01/2012 03:34:56 : INFO  : Building d1u0ka1.14.pdb
17/01/2012 03:35:27 : INFO  : Building d1xuba1.15.pdb
17/01/2012 03:35:56 : INFO  : Building d1qy9a2.16.pdb
17/01/2012 03:36:25 : INFO  : Building d1tm0a_.17.pdb
17/01/2012 03:36:55 : INFO  : Building d1xuba2.18.pdb
17/01/2012 03:37:26 : INFO  : Building d1u0ka2.19.pdb
17/01/2012 03:37:55 : INFO  : Building d2gkea1.20.pdb
17/01/2012 03:39:04 : INFO  : Finished HH model building
17/01/2012 03:39:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 03:40:17 : INFO  : html domain output complete ID '846e28bc1a63b25d'
17/01/2012 05:04:42 : INFO  : Run end  : Tue Jan 17 05:04:40 GMT 2012
