Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ADX9
DateThu Jan 5 11:22:04 GMT 2012
Unique Job ID837995e030d9bd3c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2fpoa1
Top template information
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
Confidence and coverage
Confidence:100.0% Coverage: 89%
177 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCF
Secondary structure 



























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Disorder  ???????????















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   .........70.........80.........90.........100.........110.........120
Sequence  AGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP
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   .........130.........140.........150.........160.........170.........180
Sequence  HNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAG
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   .........190........
Sequence  QVAYRLYQREAQGESDAD
Secondary structure 









SS confidence 

















Disorder 









????????
Disorder confidence 

















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fpo chain A domain 1

3D model

Region: 10 - 192
Aligned: 177
Modelled: 183
Confidence: 100.0%
Identity: 98%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 2fhp chain A domain 1

3D model

Region: 13 - 189
Aligned: 177
Modelled: 175
Confidence: 100.0%
Identity: 30%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 3p9n chain A

3D model

Region: 10 - 189
Aligned: 176
Modelled: 180
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase

Phyre2

PDB 2ift chain A domain 1

3D model

Region: 10 - 189
Aligned: 170
Modelled: 180
Confidence: 100.0%
Identity: 56%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 1ws6 chain A domain 1

3D model

Region: 11 - 188
Aligned: 167
Modelled: 178
Confidence: 100.0%
Identity: 32%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 2esr chain B

3D model

Region: 39 - 195
Aligned: 157
Modelled: 157
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: conserved hypothetical protein- streptococcus pyogenes

Phyre2

PDB 2esr chain A domain 1

3D model

Region: 39 - 189
Aligned: 151
Modelled: 151
Confidence: 100.0%
Identity: 28%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: YhhF-like

Phyre2

PDB 1nv8 chain A

3D model

Region: 19 - 191
Aligned: 169
Modelled: 171
Confidence: 99.9%
Identity: 17%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N5-glutamine methyltransferase, HemK

Phyre2

PDB 2b78 chain A

3D model

Region: 40 - 162
Aligned: 121
Modelled: 123
Confidence: 99.8%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans

Phyre2

PDB 3grz chain A

3D model

Region: 19 - 191
Aligned: 163
Modelled: 173
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus

Phyre2

PDB 2b78 chain A domain 2

3D model

Region: 40 - 162
Aligned: 121
Modelled: 123
Confidence: 99.8%
Identity: 15%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: hypothetical RNA methyltransferase

Phyre2

PDB 2as0 chain A domain 2

3D model

Region: 46 - 160
Aligned: 115
Modelled: 115
Confidence: 99.8%
Identity: 18%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: hypothetical RNA methyltransferase

Phyre2

PDB 1dus chain A

3D model

Region: 5 - 161
Aligned: 155
Modelled: 157
Confidence: 99.8%
Identity: 19%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Hypothetical protein MJ0882

Phyre2

PDB 3c0k chain B

3D model

Region: 46 - 160
Aligned: 113
Modelled: 115
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase

Phyre2

PDB 2b3t chain A domain 1

3D model

Region: 19 - 161
Aligned: 137
Modelled: 143
Confidence: 99.8%
Identity: 20%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: N5-glutamine methyltransferase, HemK

Phyre2

PDB 2igt chain A domain 1

3D model

Region: 34 - 158
Aligned: 122
Modelled: 125
Confidence: 99.8%
Identity: 21%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: hypothetical RNA methyltransferase

Phyre2

PDB 2as0 chain A

3D model

Region: 46 - 160
Aligned: 113
Modelled: 115
Confidence: 99.8%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase

Phyre2

PDB 1wy7 chain A domain 1

3D model

Region: 34 - 161
Aligned: 121
Modelled: 128
Confidence: 99.8%
Identity: 23%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Ta1320-like

Phyre2

PDB 1wxw chain A

3D model

Region: 47 - 156
Aligned: 109
Modelled: 108
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8

Phyre2

PDB 3evz chain A

3D model

Region: 27 - 168
Aligned: 134
Modelled: 142
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus

Phyre2
1

d2fpoa1
2

d2fhpa1
3

c3p9nA_
4

d2ifta1
5

d1ws6a1
6

c2esrB_
7

d2esra1
8

d1nv8a_
9

c2b78A_
10

c3grzA_
11

d2b78a2
12

d2as0a2
13

d1dusa_
14

c3c0kB_
15

d2b3ta1
16

d2igta1
17

c2as0A_
18

d1wy7a1
19

c1wxwA_
20

c3evzA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fpoa1



100.0 98 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
2d2fhpa1



100.0 30 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
3c3p9nA_



100.0 35 PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase
4d2ifta1



100.0 56 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
5d1ws6a1



100.0 32 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
6c2esrB_



100.0 27 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: conserved hypothetical protein- streptococcus pyogenes
7d2esra1



100.0 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:YhhF-like
8d1nv8a_



99.9 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
9c2b78A_



99.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein smu.776;
PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans
10c3grzA_



99.8 16 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
11d2b78a2



99.8 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
12d2as0a2



99.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
13d1dusa_



99.8 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
14c3c0kB_



99.8 16 PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
15d2b3ta1



99.8 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
16d2igta1



99.8 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
17c2as0A_



99.8 19 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ph1915;
PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase
18d1wy7a1



99.8 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
19c1wxwA_



99.8 18 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8
20c3evzA_



99.8 16 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
21d2nxca1



not modelled 99.8 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
22c3dmgA_



not modelled 99.8 23 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
23c3lpmA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
24d1wxxa2



not modelled 99.8 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
25c1uwvA_



not modelled 99.8 20 PDB header:transferase
Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma;
PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase
26c2vs1A_



not modelled 99.8 17 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780;
PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine
27d1uwva2



not modelled 99.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:(Uracil-5-)-methyltransferase
28d2frna1



not modelled 99.8 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Met-10+ protein-like
29c3egiA_



not modelled 99.8 15 PDB header:transferase
Chain: A: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase tgs1 bound to m7gpppa (inactive form)
30c2yxdA_



not modelled 99.7 21 PDB header:transferase
Chain: A: PDB Molecule:probable cobalt-precorrin-6y c(15)-methyltransferase
PDBTitle: crystal structure of cobalamin biosynthesis precorrin 8w decarboxylase2 (cbit)
31d1ne2a_



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
32c2pjdA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
33c3gdhC_



not modelled 99.7 15 PDB header:transferase
Chain: C: PDB Molecule:trimethylguanosine synthase homolog;
PDBTitle: methyltransferase domain of human trimethylguanosine2 synthase 1 (tgs1) bound to m7gtp and adenosyl-homocysteine3 (active form)
34c3a26A_



not modelled 99.7 21 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein ph0793;
PDBTitle: crystal structure of p. horikoshii tyw2 in complex with2 mesado
35c3ku1E_



not modelled 99.7 17 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
36d1l3ia_



not modelled 99.7 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
37c3lduA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:putative methylase;
PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630.
38c3bt7A_



not modelled 99.7 23 PDB header:transferase/rna
Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase;
PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue
39c3mtiA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
40c3e05B_



not modelled 99.7 25 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
41c2ozvA_



not modelled 99.7 20 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
42d2dula1



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
43d1yzha1



not modelled 99.7 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
44c3ldgA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein smu.472;
PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah
45c3gnlB_



not modelled 99.7 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
46c3e7pA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
47c3lecA_



not modelled 99.7 17 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
48d1g6q1_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
49d1jsxa_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
50c2yx1A_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein mj0883;
PDBTitle: crystal structure of m.jannaschii trna m1g37 methyltransferase
51d1f3la_



not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
52c3f4kA_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
53c3axtA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase
PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine
54d2h00a1



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Methyltransferase 10 domain
55c3b3jA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: the 2.55 a crystal structure of the apo catalytic domain of2 coactivator-associated arginine methyl transferase i(carm1:28-507,3 residues 28-146 and 479-507 not ordered)
56d2fyta1



not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
57c3mb5A_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
58c3a27A_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein mj1557;
PDBTitle: crystal structure of m. jannaschii tyw2 in complex with2 adomet
59c3njrB_



not modelled 99.6 24 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y methylase;
PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus
60d1xvaa_



not modelled 99.6 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
61d2fcaa1



not modelled 99.6 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
62c3q87B_



not modelled 99.6 15 PDB header:transferase activator/transferase
Chain: B: PDB Molecule:n6 adenine specific dna methylase;
PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112
63c3m70A_



not modelled 99.6 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
64d1oria_



not modelled 99.6 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
65c3eeyJ_



not modelled 99.6 10 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
66c1orhA_



not modelled 99.6 20 PDB header:transferase
Chain: A: PDB Molecule:protein arginine n-methyltransferase 1;
PDBTitle: structure of the predominant protein arginine methyltransferase prmt1
67c3k0bA_



not modelled 99.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase;
PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365
68d1r74a_



not modelled 99.6 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
69c3opnA_



not modelled 99.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hemolysin;
PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis
70c2v7eB_



not modelled 99.6 15 PDB header:transferase
Chain: B: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: crystal structure of coactivator-associated arginine2 methyltransferase 1 (carm1), unliganded
71d1o54a_



not modelled 99.6 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
72c1yb2A_



not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
73d1yb2a1



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
74c3g5tA_



not modelled 99.6 10 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
75d2ex4a1



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
76d1ri5a_



not modelled 99.6 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
77c3c6kC_



not modelled 99.6 16 PDB header:transferase
Chain: C: PDB Molecule:spermine synthase;
PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine
78c3hm2G_



not modelled 99.6 16 PDB header:transferase
Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase;
PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae
79c2gpyB_



not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
80c1z3cA_



not modelled 99.6 9 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
81c2pwyB_



not modelled 99.6 14 PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase
82c2yr0A_



not modelled 99.5 14 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
83c3dxyA_



not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
84d1i9ga_



not modelled 99.5 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
85d1jg1a_



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
86d1zq9a1



not modelled 99.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
87c3dlcA_



not modelled 99.5 12 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent
PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution
88d1nkva_



not modelled 99.5 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical Protein YjhP
89c3fydA_



not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:probable dimethyladenosine transferase;
PDBTitle: crystal structure of dim1 from the thermophilic archeon,2 methanocaldococcus jannaschi
90c2fk8A_



not modelled 99.5 13 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
91c3lbfC_



not modelled 99.5 12 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
92c3grrA_



not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of the complex between s-adenosyl homocysteine and2 methanocaldococcus jannaschi dim1.
93c3bgvC_



not modelled 99.5 8 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
94c2yvlB_



not modelled 99.5 18 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
95d1m6ya2



not modelled 99.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
96d1sqga2



not modelled 99.5 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:NOL1/NOP2/sun
97d2o57a1



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
98d1dl5a1



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
99d2cl5a1



not modelled 99.5 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
100c1vl5B_



not modelled 99.5 9 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
101d1vl5a_



not modelled 99.5 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
102c2yxeB_



not modelled 99.5 12 PDB header:transferase
Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase
103d1zx0a1



not modelled 99.5 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
104d1xdza_



not modelled 99.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
105d1nt2a_



not modelled 99.5 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
106d1kpia_



not modelled 99.5 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
107c3ll7A_



not modelled 99.5 21 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase pg_1098 from2 porphyromonas gingivalis w83
108d1p1ca_



not modelled 99.5 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
109d1ve3a1



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
110d2i6ga1



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TehB-like
111d1l1ea_



not modelled 99.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
112d2fk8a1



not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
113c3ocjA_



not modelled 99.5 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis
114c3g07C_



not modelled 99.5 12 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
115d1pjza_



not modelled 99.5 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
116d1xcla_



not modelled 99.5 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
117d2bzga1



not modelled 99.5 7 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
118c3lcvB_



not modelled 99.5 12 PDB header:transferase
Chain: B: PDB Molecule:sisomicin-gentamicin resistance methylase sgm;
PDBTitle: crystal structure of antibiotic related methyltransferase
119d1qama_



not modelled 99.5 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
120d1tpya_



not modelled 99.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0