Email l.a.kelley@imperial.ac.uk Description P55140 Date Thu Jan 5 12:06:10 GMT 2012 Unique Job ID 834d6c5de0481784

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ptjA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic; PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3 2 c2kw7A_ 100.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a 3 c2kptA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative secreted protein; PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a 4 c3g98B_ 76.3 11 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase 5 d3b48a1 42.3 14 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 6 c2vkcA_ 33.2 18 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 7 d1j3wa_ 31.4 22 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 8 c3bj5A_ 30.8 7 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: alternative conformations of the x region of human protein disulphide-2 isomerase modulate exposure of the substrate binding b' domain 9 c1j3wB_ 25.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:giding protein-mglb; PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8 10 d1yg6a1 25.2 8 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 11 c1qzwC_ 25.2 11 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 12 c3pdiG_ 22.4 15 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 13 d2cbya1 21.2 11 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 14 d1cvra2 18.1 13 Fold:Caspase-like Superfamily:Caspase-like Family:Gingipain R (RgpB), N-terminal domain 15 d1y7oa1 17.4 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 16 c2deoA_ 17.1 7 PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii 17 c3ds8A_ 17.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 18 d1y9ua_ 16.9 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 19 c2l8bA_ 16.7 23 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: trai (381-569) 20 c3kthD_ 15.5 10 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form 21 d2d9ia1 not modelled 15.4 19 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 22 d1a1va1 not modelled 15.2 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 23 c3iprC_ not modelled 15.2 9 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 24 c1tg6G_ not modelled 14.6 4 PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp 25 c2j37W_ not modelled 14.4 13 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 26 c1cvrA_ not modelled 14.2 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:gingipain r; PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb) 27 c2zvfG_ not modelled 13.9 16 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 28 c2cbyG_ not modelled 13.6 12 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis 29 c1g6uB_ not modelled 13.4 16 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 30 d1xvya_ not modelled 13.2 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 31 d1omza_ not modelled 13.1 7 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 32 d1pdoa_ not modelled 12.9 17 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 33 d1xc1a_ not modelled 12.3 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 34 d1nnfa_ not modelled 12.2 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 35 c2l69A_ not modelled 12.1 24 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 36 c3lfjB_ not modelled 11.1 15 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis 37 d1y4ta_ not modelled 11.0 3 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 38 d1tg6a1 not modelled 10.3 4 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 39 c3gdwA_ not modelled 10.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 40 c2j289_ not modelled 9.9 10 PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs 41 c3bqhA_ not modelled 9.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 42 d1xvxa_ not modelled 9.8 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 43 d3ct6a1 not modelled 9.1 14 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 44 c2vqzB_ not modelled 8.9 25 PDB header:transcription Chain: B: PDB Molecule:polymerase basic protein 2; PDBTitle: structure of the cap-binding domain of influenza virus2 polymerase subunit pb2 with bound m7gtp 45 d1u8sa1 not modelled 8.7 4 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 46 c3p2lD_ not modelled 8.7 6 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis 47 c2a02A_ not modelled 8.6 7 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida. 48 d1ta8a_ not modelled 8.5 19 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 49 c2ayaA_ not modelled 8.3 12 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii subunit tau; PDBTitle: solution structure of the c-terminal 14 kda domain of the2 tau subunit from escherichia coli dna polymerase iii 50 c2iy3A_ not modelled 8.2 13 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 51 d2vvpa1 not modelled 8.1 13 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 52 c3pbjE_ not modelled 8.1 21 PDB header:de novo protein Chain: E: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 53 c3pbjC_ not modelled 8.0 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 54 c3pbjD_ not modelled 8.0 24 PDB header:de novo protein Chain: D: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 55 c3pbjA_ not modelled 8.0 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 56 c3pbjF_ not modelled 8.0 24 PDB header:de novo protein Chain: F: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 57 c3pbjB_ not modelled 8.0 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 58 d2o8ia1 not modelled 8.0 15 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 59 c3dm5A_ not modelled 7.8 17 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 60 c3pilA_ not modelled 7.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 61 c1ii8B_ not modelled 7.4 9 PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain 62 c2q37A_ not modelled 7.3 10 PDB header:plant protein, lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin 63 d2q37a1 not modelled 7.3 10 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 64 c3pn1A_ not modelled 7.3 19 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 65 c3gx1A_ not modelled 7.1 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua 66 d1j3sa_ not modelled 6.9 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 67 c2d3o1_ not modelled 6.8 16 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 68 c3c9hB_ not modelled 6.7 13 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 69 d1ofda1 not modelled 6.6 13 Fold:Single-stranded right-handed beta-helix Superfamily:Alpha subunit of glutamate synthase, C-terminal domain Family:Alpha subunit of glutamate synthase, C-terminal domain 70 d1nn4a_ not modelled 6.4 19 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 71 d1xpja_ not modelled 6.2 19 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 72 d1efpb_ not modelled 6.1 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 73 d1sd4a_ not modelled 6.1 37 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 74 c2z0sA_ not modelled 5.9 5 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 75 d1wejf_ not modelled 5.8 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 76 c2h8lA_ not modelled 5.6 7 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: crystal structure of the bb' fragment of erp57