Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	V	L	K	D	A	Q	S	A	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?																											?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	Q	K	G	T	G	R	A	R	S	G	S	I	K	S	P	I	W	R	S	G	G	V	T	F	A	A	R	P	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	I	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	E	K	F	S	V	E	A	P	K	T	K	L	L	A	Q	K	L	K	D	M	A	L	E	D	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L
Secondary structure
SS confidence
Disorder						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence		I	A	F	D	K	V	V	M	T	A	D	A	V	K	Q	V	E	E	M	L	A
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gyc chain C domain 1 Region: 1 - 198 Aligned: 198 Modelled: 198 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein L4 Superfamily: Ribosomal protein L4 Family: Ribosomal protein L4 Phyre2 PDB 3bbo chain G Region: 1 - 200 Aligned: 200 Modelled: 200 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: G: PDB Molecule:ribosomal protein l4; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2j01 chain F domain 1 Region: 2 - 200 Aligned: 198 Modelled: 199 Confidence: 100.0% Identity: 30% Fold: Ribosomal protein L4 Superfamily: Ribosomal protein L4 Family: Ribosomal protein L4 Phyre2 PDB 2zjr chain C domain 1 Region: 2 - 198 Aligned: 191 Modelled: 197 Confidence: 100.0% Identity: 29% Fold: Ribosomal protein L4 Superfamily: Ribosomal protein L4 Family: Ribosomal protein L4 Phyre2 PDB 3jyw chain D Region: 2 - 199 Aligned: 197 Modelled: 198 Confidence: 100.0% Identity: 23% PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4(b); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 1vqo chain C domain 1 Region: 1 - 199 Aligned: 198 Modelled: 199 Confidence: 100.0% Identity: 20% Fold: Ribosomal protein L4 Superfamily: Ribosomal protein L4 Family: Ribosomal protein L4 Phyre2 PDB 2zkr chain C Region: 3 - 199 Aligned: 197 Modelled: 197 Confidence: 100.0% Identity: 19% PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es5; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1i chain D Region: 2 - 198 Aligned: 196 Modelled: 197 Confidence: 100.0% Identity: 23% PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4-b; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 2ftc chain D Region: 29 - 198 Aligned: 170 Modelled: 170 Confidence: 100.0% Identity: 32% PDB header:ribosome Chain: D: PDB Molecule:mitochondrial ribosomal protein l4 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 3iz5 chain D Region: 7 - 200 Aligned: 192 Modelled: 194 Confidence: 100.0% Identity: 27% PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 4a1a chain C Region: 6 - 200 Aligned: 193 Modelled: 195 Confidence: 100.0% Identity: 25% PDB header:ribosome Chain: C: PDB Molecule:rpl4; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 1dmg chain A Region: 2 - 201 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 35% Fold: Ribosomal protein L4 Superfamily: Ribosomal protein L4 Family: Ribosomal protein L4 Phyre2 PDB 1f2u chain D Region: 98 - 164 Aligned: 67 Modelled: 67 Confidence: 46.4% Identity: 16% PDB header:replication Chain: D: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of rad50 abc-atpase Phyre2 PDB 1i5e chain A Region: 112 - 172 Aligned: 61 Modelled: 61 Confidence: 44.5% Identity: 15% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1o5o chain A Region: 113 - 172 Aligned: 60 Modelled: 60 Confidence: 36.3% Identity: 8% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1ecf chain A domain 1 Region: 113 - 154 Aligned: 42 Modelled: 42 Confidence: 30.2% Identity: 10% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2ehj chain A Region: 113 - 172 Aligned: 60 Modelled: 60 Confidence: 29.4% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of uracil phosphoribosyl transferase Phyre2 PDB 2e55 chain D Region: 113 - 172 Aligned: 60 Modelled: 60 Confidence: 28.7% Identity: 7% PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus Phyre2 PDB 1ii8 chain B Region: 98 - 164 Aligned: 67 Modelled: 67 Confidence: 27.6% Identity: 15% PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain Phyre2 PDB 2vf7 chain B Region: 101 - 164 Aligned: 64 Modelled: 64 Confidence: 26.2% Identity: 16% PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Phyre2 1 d2gycc1 2 c3bboG_ 3 d2j01f1 4 d2zjrc1 5 c3jywD_ 6 d1vqoc1 7 c2zkrc_ 8 c1s1iD_ 9 c2ftcD_ 10 c3iz5D_ 11 c4a1aC_ 12 d1dmga_ 13 c1f2uD_ 14 d1i5ea_ 15 d1o5oa_ 16 d1ecfa1 17 c2ehjA_ 18 c2e55D_ 19 c1ii8B_ 20 c2vf7B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gycc1 100.0 100 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 2 c3bboG_ 100.0 29 PDB header:ribosome Chain: G: PDB Molecule:ribosomal protein l4; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 3 d2j01f1 100.0 30 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 4 d2zjrc1 100.0 29 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 5 c3jywD_ 100.0 23 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4(b); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 6 d1vqoc1 100.0 20 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 7 c2zkrc_ 100.0 19 PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es5; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 8 c1s1iD_ 100.0 23 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4-b; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 9 c2ftcD_ 100.0 32 PDB header:ribosome Chain: D: PDB Molecule:mitochondrial ribosomal protein l4 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 10 c3iz5D_ 100.0 27 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 c4a1aC_ 100.0 25 PDB header:ribosome Chain: C: PDB Molecule:rpl4; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 12 d1dmga_ 100.0 35 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 13 c1f2uD_ 46.4 16 PDB header:replication Chain: D: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of rad50 abc-atpase 14 d1i5ea_ 44.5 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 15 d1o5oa_ 36.3 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 16 d1ecfa1 30.2 10 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 17 c2ehjA_ 29.4 10 PDB header:transferase Chain: A: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of uracil phosphoribosyl transferase 18 c2e55D_ 28.7 7 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 19 c1ii8B_ 27.6 15 PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain 20 c2vf7B_ 26.2 16 PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans 21 d1gph11 not modelled 25.7 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 22 d1v9sa1 not modelled 24.0 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 23 d1xtta1 not modelled 23.4 5 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 24 c3iz5s_ not modelled 21.9 10 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 25 d1zmba1 not modelled 21.3 19 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Putative acetylxylan esterase-like 26 c3izcs_ not modelled 19.2 14 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 27 d2j01p1 not modelled 18.1 33 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 28 c3dezA_ not modelled 17.5 8 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 29 c1ecjB_ not modelled 16.7 10 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 30 c1xhbA_ not modelled 16.2 19 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 31 c2ygrD_ not modelled 16.0 11 PDB header:hydrolase Chain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra 32 d1z7ga1 not modelled 15.7 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 33 c1gpjA_ not modelled 14.8 16 PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri 34 c3nvbA_ not modelled 11.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 35 c2p1zA_ not modelled 11.5 15 PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase; PDBTitle: crystal structure of phosphoribosyltransferase from corynebacterium2 diphtheriae 36 c1gph1_ not modelled 10.9 14 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 37 c2v3jA_ not modelled 10.9 12 PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase 38 c3qw4B_ not modelled 10.5 17 PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase 39 c2pcjB_ not modelled 9.7 16 PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 40 d2v3ka1 not modelled 9.7 12 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 41 c3dmpD_ not modelled 9.7 12 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 42 d2pmka1 not modelled 9.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 43 c2jxoA_ not modelled 9.5 15 PDB header:protein binding Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50; PDBTitle: structure of the second pdz domain of nherf-1 44 c3jtpB_ not modelled 9.3 18 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 45 d1vpla_ not modelled 9.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 46 c3if4C_ not modelled 8.7 20 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:integron cassette protein hfx_cass5; PDBTitle: structure from the mobile metagenome of north west arm2 sewage outfall: integron cassette protein hfx_cass5 47 c2wnsB_ not modelled 8.3 13 PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp) 48 c3ozxA_ not modelled 8.0 11 PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain) 49 d1l1qa_ not modelled 7.7 3 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 50 c2olkD_ not modelled 7.7 12 PDB header:hydrolase Chain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s 51 d1pf4a1 not modelled 7.3 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 52 d1omza_ not modelled 7.2 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 53 c3jtoE_ not modelled 7.1 18 PDB header:protein binding Chain: E: PDB Molecule:adapter protein meca 2; PDBTitle: crystal structure of the c-terminal domain of ypbh 54 c3hjbA_ not modelled 7.1 17 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 55 c2hdnJ_ not modelled 7.0 13 PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 56 c3nbuC_ not modelled 7.0 17 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 57 d3bbda1 not modelled 6.8 6 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 58 c2d7iA_ not modelled 6.4 20 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ 59 d1y0ja1 not modelled 6.3 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 60 c3kb8A_ not modelled 6.3 21 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp 61 d2gycj1 not modelled 6.2 32 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 62 c3b85A_ not modelled 6.2 11 PDB header:hydrolase Chain: A: PDB Molecule:phosphate starvation-inducible protein; PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum 63 d1tc1a_ not modelled 6.2 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 64 c2zkr4_ not modelled 6.0 25 PDB header:ribosomal protein/rna Chain: 4: PDB Molecule:60s ribosomal protein l44e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 65 d1yfza1 not modelled 5.9 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 66 c1yfzA_ not modelled 5.9 16 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis 67 c3gd7C_ not modelled 5.7 9 PDB header:hydrolase Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp) 68 c1lkzB_ not modelled 5.7 11 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 69 d1p17b_ not modelled 5.6 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 70 d1oeyj_ not modelled 5.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 71 d3b60a1 not modelled 5.2 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 72 d1gnfa_ not modelled 5.2 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 73 d2vuti1 not modelled 5.0 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0