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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iz5D_

Fold library idPDB HeaderMoleculeTitle
c3iz5D_PDB header: ribosomeChain: D: PDB Molecule: 60s ribosomal protein l4 (l4p);PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome


Added to library: Sat Dec 11 13:58:39 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MATQTRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAES
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Known secondary structure (DSSP)
TT





B

S



SS





GGGGS


T
S



S
TTTTT
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSL
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Known secondary structure (DSSP)

SSSSS
SS





SSS


S

SSSSSTT


SSS

S








TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG
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Known secondary structure (DSSP) T





SSSS
TTSSS


T
TTSS



SGGGGTT
S



 .........220.........230.........240.........250.........260.........270.........280
Sequence PLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYVQSVVKPLNKE
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Known secondary structure (DSSP)


TTT


TSTT
GGG

SGGG




TTSTT



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence VKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYK
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Known secondary structure (DSSP) SSTT



SSTT



SS
SST
S
 .........360.........370..
Sequence TMISDSDYAEFDNFSKWLGVTQ
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Known secondary structure (DSSP) SSS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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